View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_low_16 (Length: 484)
Name: NF12891_low_16
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 43 - 476
Target Start/End: Complemental strand, 29319252 - 29318819
Alignment:
| Q |
43 |
aatccaatggaactcttctgcttgtcaaaatttcaagtctttatcatcgaaagaaactagcacatgctgtgcatcagctttgtctctttttggaatagga |
142 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29319252 |
aatccaatggaactcttctgcttgtcaaaatttcaagtctttatcatcgaaagaaactagcacatgttgtgcatcagctttgtctctttttggaatagga |
29319153 |
T |
|
| Q |
143 |
tttgcacggcatctaagagaaacctctcagttttatcttcaagatcttcaaacttcaatttcatgcatgcaagattttcaatcaaagcttaactctttat |
242 |
Q |
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||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29319152 |
tttgcacggcatctaagagaaacctctcaatttaatcttcaagatcttcaaacttcaatttcatgcatgcaagattttcaatcaaagcttaactctttat |
29319053 |
T |
|
| Q |
243 |
cactttacaacaatttagtcaactcttgctttgaccctcttcaatttgttatctctcctaacatatgtgcaggtattgaaactgttcaagattggaatga |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29319052 |
cactttacaacaatttagtcaactcttgctttgaccctcttcaatttgttatctctcctaacatatgtgcaggtattgaaactgttcaagattggaatga |
29318953 |
T |
|
| Q |
343 |
gaaggtaggtcagaattcacctctcaacactgcttgtaaaccagatctcactgatctttctcaatgcgctttgtgtgttgttgctggattagaggttaag |
442 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||| |
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| T |
29318952 |
gaaggtaggtcagaattcacctctcaacactgcttgtaaaccagatctcactgatctttctcaatgcgatgtgtgtgttgctgctggattagaggttaag |
29318853 |
T |
|
| Q |
443 |
cagaagcttgtttcagttagtggcaattcttctc |
476 |
Q |
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| |||||||||||| |||||||||||||||||| |
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| T |
29318852 |
gataagcttgtttcaattagtggcaattcttctc |
29318819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 18 - 465
Target Start/End: Original strand, 717208 - 717655
Alignment:
| Q |
18 |
ctatggaccttaactatgtcctaagaatccaatggaactcttctgcttgtcaaaatttcaagtctttatcatcgaaagaaactagcacatgctgtgcatc |
117 |
Q |
| |
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|||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| |
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| T |
717208 |
ctatggaccttaactatgtcctaagaattcattggaactcttcagcttgtcaaaatttcaattctttatcatccaaagaaactagcacatgttgtgcatc |
717307 |
T |
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| Q |
118 |
agctttgtctctttttggaataggatttgcacggcatctaagagaaacctctcagttttatcttcaagatcttcaaacttcaatttcatgcatgcaagat |
217 |
Q |
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| ||||||||| ||||||||||||||||||| |||||| | |||||| || ||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
717308 |
tgttttgtctctctttggaataggatttgcacagcatcttaaagaaacttcacagttcaatcttcaagatcttcaaacttcaaattcatgcatgcaagat |
717407 |
T |
|
| Q |
218 |
tttcaatcaaagcttaactctttatcactttacaacaatttagtcaactcttgctttgaccctcttcaatttgttatctctcctaacatatgtgcaggta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
717408 |
tttcaatcaaagcttaactctttatcactttacaacaacttggtcaactcttgttttgaccctcttcaatttgttatctctcgtaacatatgtgcaggta |
717507 |
T |
|
| Q |
318 |
ttgaaactgttcaagattggaatgagaaggtaggtcagaattcacctctcaacactgcttgtaaaccagatctcactgatctttctcaatgcgctttgtg |
417 |
Q |
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||||||||||||| |||||||||||||| || |||||||||||| || | || |||||||||||||||||||||||| ||||||||||||| | | || |
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| T |
717508 |
ttgaaactgttcatgattggaatgagaaagtgggtcagaattcatctttgaatactgcttgtaaaccagatctcactcatctttctcaatgtgatgcatg |
717607 |
T |
|
| Q |
418 |
tgttgttgctggattagaggttaagcagaagcttgtttcagttagtgg |
465 |
Q |
| |
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|||| |||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
717608 |
cgttgctgctggattacaggttaagcagaagcttgtttcagttagtgg |
717655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 331
Target Start/End: Original strand, 26942185 - 26942214
Alignment:
| Q |
302 |
aacatatgtgcaggtattgaaactgttcaa |
331 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
26942185 |
aacatatgtgcaggtattgaaactgttcaa |
26942214 |
T |
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