View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12891_low_17 (Length: 482)
Name: NF12891_low_17
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_low_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 141 - 475
Target Start/End: Complemental strand, 35341798 - 35341457
Alignment:
| Q |
141 |
ccattgcagcctaggaacctctacacaggggcggatccaagatttggtttttggtccaatgaaatttaagacaatgtactatttcatccaaattaacagt |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35341798 |
ccattgcagcctaggaacctctacacaggggcggatccaagatttggtttttggtccaatgaaatttaagacaatgtactatttcatccaaattaacagt |
35341699 |
T |
|
| Q |
241 |
tttaataatagttttatttggaccagttttcttaaccgaagtttatttgtgacgctaattagaacaaaatgggatgtcaacttcctctaacatttcattt |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35341698 |
tttaataatagttttatttggaccagttttcttaaccgaagtttatttgtgacgctaattagaacaaaatgggatgtcaacttcctctaacatttcattt |
35341599 |
T |
|
| Q |
341 |
ttatagacatccttcgtatgtaaatttatttttggaaaaaatctagtgtggcttt-------agccacaccaaggtttatgatagatccacccgtgcctc |
433 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35341598 |
ttatagacatccttcgtatgtaaatttatttttggaaaaaatctagcgtggctttagcctaaagccacaccaaggtttatgatagatccacccgtgcctc |
35341499 |
T |
|
| Q |
434 |
taatgtcatctttactgagctctagggtctcgacctttgctt |
475 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35341498 |
taatgtcatctttactgagctctagggtcttgacctttgctt |
35341457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 18 - 143
Target Start/End: Complemental strand, 35342242 - 35342117
Alignment:
| Q |
18 |
gactaatggtgtctcttgcattcattatagagattaagatgaaacaatcatgatcaaaagtgttcggcgaagttcttcagttttggtctttgactggcaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35342242 |
gactaatggtgtctcttgcattcattatagagattaagatgaaacaatcatgatcaaaagtgttcggcgaagttcttcagttttggtctttgactggcaa |
35342143 |
T |
|
| Q |
118 |
ttggaatcttactattgattgcacca |
143 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
35342142 |
ttggaatcttactattgattgcacca |
35342117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 321 - 365
Target Start/End: Complemental strand, 4374085 - 4374041
Alignment:
| Q |
321 |
cttcctctaacatttcatttttatagacatccttcgtatgtaaat |
365 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4374085 |
cttcttctaacatttcatttttatagacatccttcatatgtaaat |
4374041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 365
Target Start/End: Original strand, 32103994 - 32104040
Alignment:
| Q |
319 |
aacttcctctaacatttcatttttatagacatccttcgtatgtaaat |
365 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32103994 |
aacttcttcaaacatttcatttttatagacatccttcatatgtaaat |
32104040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 362
Target Start/End: Complemental strand, 7116544 - 7116497
Alignment:
| Q |
315 |
tgtcaacttcctctaacatttcatttttatagacatccttcgtatgta |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||| | | ||||||||||| |
|
|
| T |
7116544 |
tgtcaacttcctctaacatttcatttttataaaaaagcttcgtatgta |
7116497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 364
Target Start/End: Original strand, 24912212 - 24912260
Alignment:
| Q |
316 |
gtcaacttcctctaacatttcatttttatagacatccttcgtatgtaaa |
364 |
Q |
| |
|
||||| || |||||||| || ||||||||||||||||||| |||||||| |
|
|
| T |
24912212 |
gtcaagtttctctaacactttatttttatagacatccttcatatgtaaa |
24912260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University