View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_low_20 (Length: 453)
Name: NF12891_low_20
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 445
Target Start/End: Original strand, 30709875 - 30710303
Alignment:
| Q |
18 |
ttattaaatcagaaaggtttactctaata-attactatctaacatgagaatcacgtcttgtactgttatggaaatattgtaacctgtatcctttttagat |
116 |
Q |
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|||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30709875 |
ttattaaatcagaaaggtttacacatatatattactatctaacatgagaatcacgtcttgtactgttatggaaatattgtaacctgtatcctttttagat |
30709974 |
T |
|
| Q |
117 |
tgttaaattgttatctgaagctgattataaactgaacctcagtatttgaatggagaaattgtcagagatgacaatttagacctagtgaattaacaggnnn |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30709975 |
tgttaaattgttatctgaagctgattataaactgaacctcagtatttgaatggagaaattgtcagagatgacaatttagacctagtgaattaacaggaaa |
30710074 |
T |
|
| Q |
217 |
nnnntgcagctagaatttcaaagtagcaagcatatttgcaatatgccctagctgaataattaatgtcgtaaaaattgcaacnnnnnnnnncagaaagaaa |
316 |
Q |
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| T |
30710075 |
aaaatgcagctagaatttcaaagtagcaagcatatttgcaatatgccctagctgaataattaatgtcgtaaaaattccaacaacaaaaaacagaaagaaa |
30710174 |
T |
|
| Q |
317 |
attacaaacaaagttaattattagaagttggttaagcttgtactttgattatctgacatacttagaagttgctcaagatattcaactcccaaatcctcta |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30710175 |
attacaaacaaagttaattattagaagttggttaagcttgtactttgattatctgacatacttagaagttgctcaagatattcaactcccaaatcctcta |
30710274 |
T |
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| Q |
417 |
acaccaacacacttgatgatccctatgct |
445 |
Q |
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|||||||||||||||||||||||| |||| |
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| T |
30710275 |
acaccaacacacttgatgatccctctgct |
30710303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 352 - 433
Target Start/End: Original strand, 30671555 - 30671636
Alignment:
| Q |
352 |
gcttgtactttgattatctgacatacttagaagttgctcaagatattcaactcccaaatcctctaacaccaacacacttgat |
433 |
Q |
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|||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30671555 |
gcttgtactttgatgatctgacatagttaaaagttgctcaagatattcaactcccaaatcctctaacaccaaaacacttgat |
30671636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 352 - 433
Target Start/End: Original strand, 30656394 - 30656475
Alignment:
| Q |
352 |
gcttgtactttgattatctgacatacttagaagttgctcaagatattcaactcccaaatcctctaacaccaacacacttgat |
433 |
Q |
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||||||| |||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30656394 |
gcttgtagtttgattatcagatatggttagaagttgctcaagatattcaactcccaaatcctctaacaccaaaacacttgat |
30656475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 352 - 433
Target Start/End: Original strand, 30689453 - 30689534
Alignment:
| Q |
352 |
gcttgtactttgattatctgacatacttagaagttgctcaagatattcaactcccaaatcctctaacaccaacacacttgat |
433 |
Q |
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|||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30689453 |
gcttgtactttgattatcagatatggatagaagttgctcaagatattcaactcccaaatcctctaacaccaaaacacttgat |
30689534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 352 - 433
Target Start/End: Original strand, 30698336 - 30698417
Alignment:
| Q |
352 |
gcttgtactttgattatctgacatacttagaagttgctcaagatattcaactcccaaatcctctaacaccaacacacttgat |
433 |
Q |
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||||| |||||||||||| || || ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30698336 |
gcttgaactttgattatcagatattgttagaagttgctcgagatattcaactcccaaatcctctaacaccaaaacacttgat |
30698417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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