View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_low_24 (Length: 436)
Name: NF12891_low_24
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 6e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 227 - 426
Target Start/End: Complemental strand, 2154331 - 2154131
Alignment:
| Q |
227 |
tactagctttttcaaacaaattttcatactttaattgttttaattttattt--ctcagataaatgtaaagaatatagtcattttcatttgcggtgatatt |
324 |
Q |
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| T |
2154331 |
tactagctttttcaaacaaattttcatactttaattgttttaattttttttttctcagataaatgtaaagaatatagtcattttcatttgcggtgatatt |
2154232 |
T |
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| Q |
325 |
tgtttttgtgtgatgcacttattgatactatagannnnnnnngtgtcgacatttattcattcaagttacgtccttagtggaataccaaaccccacctctc |
424 |
Q |
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| T |
2154231 |
tgtttttgtgtgatgcacttattgatactataga-tttttttgtgtcgacatttattcattcaagttacgtccttagtggaataccaaaccccacctctc |
2154133 |
T |
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| Q |
425 |
tg |
426 |
Q |
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|| |
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| T |
2154132 |
tg |
2154131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 2154501 - 2154327
Alignment:
| Q |
17 |
atattggagaagacaggttgctcctaagaagtcattaaattttttatggtaacataaaaatatcattttctgggccccttgtaaaactcagaaagcaatc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2154501 |
atattggagaagacaggttgctcctaagaagtcattaaattttttatggtaacataaaaatatcattttctggggcccttgtaaaactcagaaagcaatc |
2154402 |
T |
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| Q |
117 |
acattcattggttcagatgttttcaacaannnnnnnnnataacaagttaaaataacacaaactatttgatatacta |
192 |
Q |
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| T |
2154401 |
acattcattggttcagatgttttcaac-atttttttttttaacaagttaaaataacacaaactatttgatatacta |
2154327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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