View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_low_25 (Length: 433)
Name: NF12891_low_25
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 428
Target Start/End: Complemental strand, 31820462 - 31820052
Alignment:
| Q |
18 |
aacatatgacggatttagcaaactaaatacgactaggtgctatttttcaccctgccctcgttactgaagaagaactcatgctttaggaaatgcacttcta |
117 |
Q |
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| T |
31820462 |
aacatatgacggatttagcaaactaaatacgactaggtgctatttttcaccctgccctcgttactgaagaa---ctcatgctttaggaaatgcacttcta |
31820366 |
T |
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| Q |
118 |
aatgacataaggttgttttaaatgtgtacataatattannnnnnncaacctaactagtgtatatgttttgtctttttatggaccgtgtgaaatgaattga |
217 |
Q |
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| T |
31820365 |
aatgacataaggttgttttaaatgtgtacataatattatttttt-caacataactagtgtatttgttttgtctttttatggaccgtgtgaaatgaattga |
31820267 |
T |
|
| Q |
218 |
actcaattaaagtatgccgaatagtacaaatcatattgtatattccttgcccctcaaacaaactgta----tatactgttcataataaatacagttttta |
313 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
31820266 |
acttaattaaagtatgccgaatagtacaaatcatattgtatattccttgcccctcaaacaaactgtatatatatactgttcataataaatacagttttta |
31820167 |
T |
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| Q |
314 |
tagtatgnnnnnnnnnnnnnggttgacaggtttacatagtattagtatgtattgtagaagttattttattcattttggaagaaaaacacgaggatgcatt |
413 |
Q |
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||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31820166 |
tagtatgtttttctttttttggttgaaaggtttacatagtattagtatgtattgtagaagttattttattcattttggaagaaaaacacgaggatgcatt |
31820067 |
T |
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| Q |
414 |
attattcttctcact |
428 |
Q |
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||||||||| ||||| |
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| T |
31820066 |
attattcttttcact |
31820052 |
T |
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