View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_low_27 (Length: 426)
Name: NF12891_low_27
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 171 - 408
Target Start/End: Original strand, 54848395 - 54848632
Alignment:
| Q |
171 |
attgaggtgtggcttttgattttattttaacaaaggaaaatgattacccggtgcatcataataggtaaagatgtagttccataacaatgttcatgtcatg |
270 |
Q |
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| T |
54848395 |
attgaggtgtggctgttgattttattttaacaaaggaaaatgattacccggtgcatcataataggtaaagatgtagttccataacaatgttcatgtcatg |
54848494 |
T |
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| Q |
271 |
acatggaccacacctagttattcgttaataggcctttggtgttttgaggaccttattatcttactgaggtggaggattactctgcagagtcttgtgcaat |
370 |
Q |
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| T |
54848495 |
acatggaccacacctagttattcgttaataggcctttggtgttttgaggaccttattatcttactgaggtggaggattactctgcggagtcttgtgcaat |
54848594 |
T |
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| Q |
371 |
ttggtcacatcatacccgtcatccttagctttctgaac |
408 |
Q |
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| T |
54848595 |
ttggtcacatcatacccgtcatccttagctttctgaac |
54848632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 54848323 - 54848391
Alignment:
| Q |
38 |
tcagtttttggggaaaattcaatgaacccattatttttctttttgaatatgcaaggaatccatttgtga |
106 |
Q |
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| T |
54848323 |
tcagtttttggggaaaattcaatgaacccattatttttctttttgaatatgcaaggaatccatttgtga |
54848391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 328 - 404
Target Start/End: Original strand, 54819502 - 54819578
Alignment:
| Q |
328 |
atcttactgaggtggaggattactctgcagagtcttgtgcaatttggtcacatcatacccgtcatccttagctttct |
404 |
Q |
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| T |
54819502 |
atcttactcaggtggaggatcactctgtggagtcttgtgcaatttactcacatcatagccttcttccttagctttct |
54819578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 408
Target Start/End: Original strand, 54816543 - 54816594
Alignment:
| Q |
357 |
gagtcttgtgcaatttggtcacatcatacccgtcatccttagctttctgaac |
408 |
Q |
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| T |
54816543 |
gagtcttgcgcagtttgctcacatcatacccttcttccttagctttctgaac |
54816594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 331 - 405
Target Start/End: Complemental strand, 35801131 - 35801057
Alignment:
| Q |
331 |
ttactgaggtggaggattactctgcagagtcttgtgcaatttggtcacatcatacccgtcatccttagctttctg |
405 |
Q |
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| T |
35801131 |
ttactgaggtggaggtttactctgtggagtcttgtgcaatttggtcgcatcatacccgtcatccttagttttctg |
35801057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 14855387 - 14855321
Alignment:
| Q |
38 |
tcagtttttggggaaaattcaatgaacccattattt-ttctttttgaatatgcaaggaatccatttg |
103 |
Q |
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| T |
14855387 |
tcagtttttggggaaaattcaatgaacctattttttcttctttttgaatatgcaagaaatccatttg |
14855321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 43 - 169
Target Start/End: Complemental strand, 31871492 - 31871366
Alignment:
| Q |
43 |
ttttggggaaaattcaatgaacccattattt-ttctttttgaatatgcaaggaatccatttgtgatcggtgaagcggttccttnnnnnnngaaaatctat |
141 |
Q |
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| T |
31871492 |
ttttggggaaaatttaatgaatccattttttcttctttttgaatatgcaagaaatccatttgaaatcggtgaagattttccttaaaaaaataaaatctat |
31871393 |
T |
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| Q |
142 |
gaagaagctacatgttatttggattatt |
169 |
Q |
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| T |
31871392 |
gaagaagctacatg-tatttggattatt |
31871366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 42640732 - 42640798
Alignment:
| Q |
133 |
aaaatctatgaagaagctacatgttatttggattattaattgaggtgtggcttttgattttattttaacaaa |
204 |
Q |
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| T |
42640732 |
aaaatctatgaagaagctacatg-tatttggatt----attgaggtgtgactgttgattttgttttaacaaa |
42640798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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