View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_low_28 (Length: 425)
Name: NF12891_low_28
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 6 - 409
Target Start/End: Original strand, 44670584 - 44670993
Alignment:
| Q |
6 |
agaagcaaaggggaagaaaaggatagccaagtataaagttcacagcgtggaagggaaagttaaagctacactcaagaaaggacttcgatggatcaagaaa |
105 |
Q |
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| T |
44670584 |
agaagcaaagaggaagaaaaggatagccaagtataaagttcacagcgtggaagggaaagttaaagctacactcaagaaaggacttcgatggatcaagaaa |
44670683 |
T |
|
| Q |
106 |
aaatgctctcaaatcactcatggctactaatag------ctagtacttttattcaatgtacaaatgcattaatgttacggtcatcaatatctgataatgc |
199 |
Q |
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| T |
44670684 |
aaatgctctcaaatcactcatggctactaatagtaatagctattacttttatgcaatgtacaaatgcattaatgttacggtcatcaatatctgataatgc |
44670783 |
T |
|
| Q |
200 |
attgtatatgcttttgttttactcttatctcatgtatgcattcttgaaaacatttgtgctaagtgccaatttgcgattagcacaaacaaattgattttaa |
299 |
Q |
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| T |
44670784 |
attgtatatgcttttgttttactcttatctcatgtatgcattcttgaaaacatttgtgctaagtgccaatttgcgattagcacaaacaaattgattttaa |
44670883 |
T |
|
| Q |
300 |
ttactcaaacacaacctcattcgttaggcagaccaagatttcaaggtacaaacttttaataatactttcttcacaattgttttgtttgaaatatatcttc |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44670884 |
ttactcaaacacaacctcattcgttaggcagaccaagatttcaaggtacaaacttttaataatactttcttcacaattgttttgtttgaaatatatcttc |
44670983 |
T |
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| Q |
400 |
tgctaagatc |
409 |
Q |
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| T |
44670984 |
tgctaagatc |
44670993 |
T |
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