View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_low_29 (Length: 421)
Name: NF12891_low_29
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 41744790 - 41744371
Alignment:
| Q |
1 |
aaaaaatgtaaaagtataatgtacatatatatat--------tgcaaggacttttaatttgtctgaagaagtctcccacggttctcaactccttgaccaa |
92 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41744790 |
aaaaaatgtaaaagtataatgtacatatatatatatatatattgcaaggacttttaatttgtctgaagaagtctcccacggttctcaactccttgaccaa |
41744691 |
T |
|
| Q |
93 |
ctgcaaaatgtggaacgatcacatgaattgttgtctttctgtagtcaaagtataatttcatattaggatataatataggaaa-ttgtttaagaaaacatg |
191 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
41744690 |
ctgcaaaatgtggaacgatcacatgaattattgtctttctgtagtcaaagtataatttcatattaggatataatataggaaaattgtttaagaaaacatg |
41744591 |
T |
|
| Q |
192 |
ttatttaccttcttgagtagtgttgtttctttgtgaagaattagtatgtgttataggattttttacaacatttttctgttgtggttgttcatcatttctt |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
41744590 |
ttatttaccttcttgagtagtgttgtttctttgtgaagaattagtatgtgttataggattttttacaacatttttctgttgtggttgtacatcatttctt |
41744491 |
T |
|
| Q |
292 |
agaaaagaattcacagctcctttcaccttctctatcacaccaataccattagaactacttcttctaggattcattaatgtttgagaaggatatgaacttt |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
41744490 |
agaaaagaattcacagctcctttcaccttctctatcacaccaataccattagaactacttcttctaggactcattaatgcttgagaaggatatgaacttt |
41744391 |
T |
|
| Q |
392 |
tagggctaatagtattcttc |
411 |
Q |
| |
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|||||||||||||||||||| |
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| T |
41744390 |
tagggctaatagtattcttc |
41744371 |
T |
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