View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_low_3 (Length: 622)
Name: NF12891_low_3
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 573; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 13 - 605
Target Start/End: Original strand, 35665913 - 35666505
Alignment:
| Q |
13 |
agcagagataaaagacacatcaaagaacattaggatgtggcttggtacctataaaactgctgaggaagctgctcgagcttacgatgaagctgcttttctc |
112 |
Q |
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| T |
35665913 |
agcagagataaaagacacatcaaagaacattaggatgtggcttggtacctataaaactgctgaggaagctgctcgagcttacgatgaagctgcttttctc |
35666012 |
T |
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| Q |
113 |
cttagaggtacaaacactcgcaccaatttctctactactcattccatccctaccaattctccaatatctctcaaactgaaaaacctacttcatcgtaaat |
212 |
Q |
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|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35666013 |
cttagaggtacaaatactcgtaccaatttctctactactcattccatccctaccaattctccaatatctctcaaactgaaaaacctacttcatcgtaaat |
35666112 |
T |
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| Q |
213 |
ccatctcaaatctaagtcaaagtaaaaatcagtgcactttgatgagttcctctttacaaggcgctcctattgataatagcatcatggtaatggaaaatga |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35666113 |
ccatctcaaatctaagtcaaagtaaaaatcagtgcactttgatgagttcctctttacaaggtgctcctattgataatagcatcatggtaatggaaaatga |
35666212 |
T |
|
| Q |
313 |
aaacaaatcttcatgtagtagtgaagagtcaaagtcttcgttttgggttcagaaccaattagtatctgaatataatccttatggggtggatatgaatatg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35666213 |
aaacaaatcttcatgtagtagtgaagagtcaaagtctttgttttgggttcagaaccaattagtatctgaatataatccttatggggtggatatgaatatg |
35666312 |
T |
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| Q |
413 |
atgaactgctcaatgggtattacaccaaatacattacagattgattattcttggccattacctcaacaaaggattaacgagttaccaacactaaatgata |
512 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35666313 |
atgaactgctcaattggtattacaccaaatacattacagattgattattcttggccattacctcaacaaaggattaacgagttaccaacactaaatgata |
35666412 |
T |
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| Q |
513 |
gtgtgaatgtatatggtatgaatgagtgctatgtggaaggtacatatgaatctaagtatgaatatgatgtcaattaccctctttctcacttgt |
605 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35666413 |
gtgtgaatgtatatggtatgaatgagtgctatgtggaaggtacatatgaatctaagtatgaatatgatgtcaattaccctctttctcacttgt |
35666505 |
T |
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