View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_low_31 (Length: 405)
Name: NF12891_low_31
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 23 - 386
Target Start/End: Original strand, 40160868 - 40161231
Alignment:
| Q |
23 |
ctagaataaaaacgtaattgatttaaacaatgataaagatgtatatcaattaaaatttgatcttaaacatatcaaagcattgggccaaaaccatgtacat |
122 |
Q |
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| T |
40160868 |
ctagaataaaaacttaatttatttaaacaatgataaagatgtatatcaattaaaatttgatcttaaacatatcaaagcattgggccaaaaccatgtacat |
40160967 |
T |
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| Q |
123 |
caaggtgattatggtttcatagaaaatgccattgagtccttaaagatgtgaaattgaaaatgccaaaggaaataaaaaatcagtaaatggtttcatagaa |
222 |
Q |
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| T |
40160968 |
caaggtgattatggtttcatagaaaatgccattgagtccttaaagatgtgaaattgaaaatgccaaaggaaataaaaaatcagtaaatggtttcatagaa |
40161067 |
T |
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| Q |
223 |
aactatgtacctgctaatgtagttgcatataaaaaagaacctagtaactttagaataagtttccatcgttcgcctcagtgcattctgtaaccaaattgca |
322 |
Q |
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| T |
40161068 |
aactatgtacctgctaatgtagttgcatataaaaaagaacctagtaactttagaataagtttccatcgttcgcctcagtgcattctgtaaccaaattgca |
40161167 |
T |
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| Q |
323 |
ggtggtatgaaatcatttcactttattaattgaacaagcaaagcttggaatgaaaaacagtgaa |
386 |
Q |
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| T |
40161168 |
ggtggtatgaaatcatttcactttattaattgaacaagcaaaggttggaatgaaaaacagtgaa |
40161231 |
T |
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