View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_low_33 (Length: 395)
Name: NF12891_low_33
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 380
Target Start/End: Complemental strand, 38536557 - 38536205
Alignment:
| Q |
18 |
acaaagttggtgcttggacatataactctatctgccaggatattaaaattcatccataatttgaagcaagtgttcagcaacttcttnnnnnnnnn-gtgt |
116 |
Q |
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| T |
38536557 |
acaaagttggtgcttggacatataactctatctgccaggatattaaaattcatccataatttgaagcaagtgttcagcaacttcttaaaaaaaaaagtgt |
38536458 |
T |
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| Q |
117 |
tcaaacgacaacttgtttgatttacatcaagatactatgacagtcaactgagaggatttacattgaagtattataatgatttcttgtgtcaaaagtctta |
216 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | | |||||||||||||||||||||| |
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| T |
38536457 |
tcaa-cgacaacttgtttgatttacatcaagatactatgac----------gaggatttacattgaagtattacactaatttcttgtgtcaaaagtctta |
38536369 |
T |
|
| Q |
217 |
ataacaagatgtttaagcgacgtgttccgttgattgccacaacgacaagtgtatttggatgaagaaaagtggaggttgaccattatataagtgacaaaat |
316 |
Q |
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||||||| ||||||||||||||||||||||||||| ||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38536368 |
ataacaaaatgtttaagcgacgtgttccgttgattaccacagcaacaagtgtatgtggatgaagaaaagtggaggttgaccattatataagtgacaaaat |
38536269 |
T |
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| Q |
317 |
ccataaactaaatatcttattgctcttgactcaatgtggttgatcctctttaactcctcctatg |
380 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38536268 |
ccataaactaaatatcttattgctcttgattcaatgtggttgatcctctttaactcctcctatg |
38536205 |
T |
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