View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_low_34 (Length: 388)
Name: NF12891_low_34
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 69 - 379
Target Start/End: Original strand, 14628973 - 14629286
Alignment:
| Q |
69 |
acaaatattgaagaagcctatgaaatttgacagtattcaacggcagtagattttaagagttgatga---tgatggcatcgaatgattcagttagtaataa |
165 |
Q |
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| T |
14628973 |
acaaatattgaagaagcctatgaaatttgacggtattcaacggcagtagattttaagagttgatgaagatgatggcatcgaatgattcagttagtaataa |
14629072 |
T |
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| Q |
166 |
tattttcaacagtttgaaactcaaatactcatttattcacatttttaagcctctgaactaggcgacaaaaaacttcaacctagaaacatgtgaattgaag |
265 |
Q |
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| T |
14629073 |
tattttcaacagtttgaaactcaaatactcattcattcacatttttatgcctcaaaactaggcgacaaaaaacttcaacctagaaacatgtgaatcgaag |
14629172 |
T |
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| Q |
266 |
gaaggagaccaagaaaaacagaatggataaactgcccagctaagattttaattgttgcaagttcacatttgtttcatactaaatgtttgtttctccgaca |
365 |
Q |
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| T |
14629173 |
gaaggagaccaagaaaaacagaatggataaactgcccaggtaagattttaattatttcaagttcacatttgtttcatactaaatgtttgtttctccgaca |
14629272 |
T |
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| Q |
366 |
acaccgctctctgc |
379 |
Q |
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| T |
14629273 |
acaccgctctctgc |
14629286 |
T |
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