View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_low_35 (Length: 384)
Name: NF12891_low_35
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 20 - 370
Target Start/End: Original strand, 35354262 - 35354617
Alignment:
| Q |
20 |
agtgtaccatgtcatatttccttttatgttgatcagaatgctacacaaccagatttggatttctatttcacgttaccaaactgctaaaggaaaaagcaag |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35354262 |
agtgtaccatgtcatatttccttttatgttgatcagaatgctacacaaccagatttggatttctatttcacgttaccaaactgctaaaggaaaaagcaag |
35354361 |
T |
|
| Q |
120 |
attgttgacaaaggccttgaattcgaacaagttgatagagaaaccaattggttagttccaa-----nnnnnnnnnnnnnnccctttaaataatactcttt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
35354362 |
attgttgacaaaggccttgaattcgaacaagttgatagagaaaccaattggttagttccaattttttttttttttattttccctttaaataatacttttt |
35354461 |
T |
|
| Q |
215 |
ctattaaacattaatctatgttaagattttgactgtgtggcatttgcagggatgatcaaatattgttcactgcactagtatattatataggatacatgat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35354462 |
ctattaaacattaatctatgttaagattttgactgtttggcatttgcagggatgatcaaatattgttcactgcactagtatattatataggatacatgat |
35354561 |
T |
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| Q |
315 |
atttcctatagcctctaatttaccatggtggagaacagatggtgtgattcttacag |
370 |
Q |
| |
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||||||||| || ||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
35354562 |
atttcctatggcttctaacttaccatggtggagaatagatggtgtgattcttacag |
35354617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 31 - 180
Target Start/End: Original strand, 35369307 - 35369456
Alignment:
| Q |
31 |
tcatatttccttttatgttgatcagaatgctacacaaccagatttggatttctatttcacgttaccaaactgctaaaggaaaaagcaagattgttgacaa |
130 |
Q |
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|||||| ||||||||| ||| |||||||||||||||| ||||||||||||||||| ||||| || ||||||||| ||| |||||||| ||||||||||| |
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| T |
35369307 |
tcatatgtccttttatattggtcagaatgctacacaatcagatttggatttctatctcacgatatgaaactgctagaggcaaaagcaaaattgttgacaa |
35369406 |
T |
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| Q |
131 |
aggccttgaattcgaacaagttgatagagaaaccaattggttagttccaa |
180 |
Q |
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| |||||||||| |||||||| ||||||||||||||||||||| |||||| |
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| T |
35369407 |
aagccttgaatttgaacaagtcgatagagaaaccaattggttaattccaa |
35369456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 255 - 370
Target Start/End: Original strand, 35369647 - 35369762
Alignment:
| Q |
255 |
catttgcagggatgatcaaatattgttcactgcactagtatattatataggatacatgatatttcctatagcctctaatttaccatggtggagaacagat |
354 |
Q |
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||||||||||||||| ||||| |||||||||||||| |||| || ||||||||||||||||||||||| || ||||| |||||||||||||||| |||| |
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| T |
35369647 |
catttgcagggatgaccaaattttgttcactgcactgttatactacataggatacatgatatttcctatggcttctaacttaccatggtggagaatagat |
35369746 |
T |
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| Q |
355 |
ggtgtgattcttacag |
370 |
Q |
| |
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|||||||||||||||| |
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| T |
35369747 |
ggtgtgattcttacag |
35369762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 256 - 370
Target Start/End: Original strand, 35379007 - 35379121
Alignment:
| Q |
256 |
atttgcagggatgatcaaatattgttcactgcactagtatattatataggatacatgatatttcctatagcctctaatttaccatggtggagaacagatg |
355 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||| ||||||| ||||| |||| | ||||||||||| || ||||| |||||||||||||||| ||||| |
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| T |
35379007 |
atttgcagggatgatcaaatgttgttcactgtactcgtatattgtatagcatactttatatttcctatggcttctaacttaccatggtggagaatagatg |
35379106 |
T |
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| Q |
356 |
gtgtgattcttacag |
370 |
Q |
| |
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||||||||||||||| |
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| T |
35379107 |
gtgtgattcttacag |
35379121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 31 - 163
Target Start/End: Original strand, 35378191 - 35378323
Alignment:
| Q |
31 |
tcatatttccttttatgttgatcagaatgctacacaaccagatttggatttctatttcacgttaccaaactgctaaaggaaaaagcaagattgttgacaa |
130 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||| || ||||||| |||| | ||||| || |||||||||||||| |||| || ||||||||||| |
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| T |
35378191 |
tcatatttccttttgcattggtcagaatgctacacaatcaaatttggacttctgtctcacgctatcaaactgctaaaggcaaaaacagaattgttgacaa |
35378290 |
T |
|
| Q |
131 |
aggccttgaattcgaacaagttgatagagaaac |
163 |
Q |
| |
|
||||||||||||||||||||| || |||||||| |
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| T |
35378291 |
aggccttgaattcgaacaagtcgacagagaaac |
35378323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 31 - 172
Target Start/End: Original strand, 19683642 - 19683783
Alignment:
| Q |
31 |
tcatatttccttttatgttgatcagaatgctacacaaccagatttggatttctatttcacgttaccaaactgctaaaggaaaaagcaagattgttgacaa |
130 |
Q |
| |
|
||||||| |||| ||| ||| ||||||||||||| || ||||| ||||||||||| ||||| ||||||||||||||||||||||| | ||||||||||| |
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| T |
19683642 |
tcatattcccttatatattggtcagaatgctacataatcagatatggatttctatctcacgctaccaaactgctaaaggaaaaagaagaattgttgacaa |
19683741 |
T |
|
| Q |
131 |
aggccttgaattcgaacaagttgatagagaaaccaattggtt |
172 |
Q |
| |
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|||||| |||||||| ||||| || ||||||||||||||||| |
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| T |
19683742 |
aggcctggaattcgaccaagtcgacagagaaaccaattggtt |
19683783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 235 - 370
Target Start/End: Original strand, 19684048 - 19684183
Alignment:
| Q |
235 |
ttaagattttgactgtgtggcatttgcagggatgatcaaatattgttcactgcactagtatattatataggatacatgatatttcctatagcctctaatt |
334 |
Q |
| |
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|||||||||| | |||||| |||||||||||||||||||||||||||||||||| || | | ||||||| |||| |||||||||||| || | || | |
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| T |
19684048 |
ttaagattttcattgtgtgacatttgcagggatgatcaaatattgttcactgcattaatgttttatatactttacacgatatttcctatggctgccaact |
19684147 |
T |
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| Q |
335 |
taccatggtggagaacagatggtgtgattcttacag |
370 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
19684148 |
taccatggtggagaacagatggtgtgattcttacag |
19684183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 31 - 172
Target Start/End: Complemental strand, 19632701 - 19632560
Alignment:
| Q |
31 |
tcatatttccttttatgttgatcagaatgctacacaaccagatttggatttctatttcacgttaccaaactgctaaaggaaaaagcaagattgttgacaa |
130 |
Q |
| |
|
|||||||||||| |||||| | ||||||||||||| |||||| ||||||||||| ||||| || |||||||||||||| |||| || ||||||||||| |
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| T |
19632701 |
tcatatttccttatatgtttgtgagaatgctacacagccagatctggatttctatctcacgctatcaaactgctaaaggcaaaaacagaattgttgacaa |
19632602 |
T |
|
| Q |
131 |
aggccttgaattcgaacaagttgatagagaaaccaattggtt |
172 |
Q |
| |
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| |||| |||||||||||||| || ||||||||||| ||||| |
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| T |
19632601 |
atgcctagaattcgaacaagtcgacagagaaaccaactggtt |
19632560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 235 - 370
Target Start/End: Complemental strand, 19630749 - 19630614
Alignment:
| Q |
235 |
ttaagattttgactgtgtggcatttgcagggatgatcaaatattgttcactgcactagtatattatataggatacatgatatttcctatagcctctaatt |
334 |
Q |
| |
|
|||||||||| | | |||| ||||||||||||||||||||||||||| ||||||||| | |||||| ||||| ||||||||||| || |||| | |
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| T |
19630749 |
ttaagattttcattatgtgacatttgcagggatgatcaaatattgttgactgcactaaccttctatatactatacacaatatttcctatggctgctaact |
19630650 |
T |
|
| Q |
335 |
taccatggtggagaacagatggtgtgattcttacag |
370 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||| |
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|
| T |
19630649 |
taccatggtggagaacagatggtgtggttcttacag |
19630614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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