View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_low_36 (Length: 378)
Name: NF12891_low_36
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 368
Target Start/End: Complemental strand, 1842644 - 1842290
Alignment:
| Q |
18 |
atcttgtgtgaatattttagtgctttcagttgag---tcttctcttgttgagagtttttgttttaaaatcagaccaccattctgctcaaagaatttctct |
114 |
Q |
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| T |
1842644 |
atcttgtgtgaatattttagtgctttcagttgaggagtcttctcttgttgagagtttttgttttaaaatcagaccaccattctgctcaaagaatttctct |
1842545 |
T |
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| Q |
115 |
ttcattttgatgaatttccttttatggtatattaagtacgagaatgtcccaaccaaaagaagaataagtgttgctcctactcctgcattaatttatatca |
214 |
Q |
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| T |
1842544 |
ttcattttgatgaatttccttttatggtatattaagtacgagaatgtcccaaccaaaagaagaataagcgttgctcctactcctgcattaatttatatca |
1842445 |
T |
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| Q |
215 |
atagcatagtaaatgaacatgctaatgcaagaattatnnnnnnngtg-gggaaaaaatgaatttaaacaaaatcaatagggcatgcttagttgcttacca |
313 |
Q |
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| T |
1842444 |
atagcatagtaaatgaacatgctaatgtaagaattataaaaaaagtgaggaaaaaaatgaatttaaacaaaatcaatagggcatgcttagttgcttacca |
1842345 |
T |
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| Q |
314 |
ataacagtgagtggtaatattagagttgcttttgtctggcaccctctttcctttg |
368 |
Q |
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| T |
1842344 |
ataacagtgagtggtaatattggagttgcttttgtctggcaccctctttcctttg |
1842290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 49 - 201
Target Start/End: Complemental strand, 1868195 - 1868043
Alignment:
| Q |
49 |
gagtcttctcttgttgagagtttttgttttaaaatcagaccaccattctgctcaaagaatttctctttcattttgatgaatttccttttatggtatatta |
148 |
Q |
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| T |
1868195 |
gagtcttctcttgttgagagtttttgtttcaaaatcaaaccaccattctgttcgaagaatttctctttcattttgatgaatttcctcttatggtacatta |
1868096 |
T |
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| Q |
149 |
agtacgagaatgtcccaaccaaaagaagaataagtgttgctcctactcctgca |
201 |
Q |
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| T |
1868095 |
agtacgagaatgttcccaaaaagagaagaataaatgttattcctactcctgca |
1868043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 91 - 150
Target Start/End: Original strand, 1816459 - 1816518
Alignment:
| Q |
91 |
ccattctgctcaaagaatttctctttcattttgatgaatttccttttatggtatattaag |
150 |
Q |
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| T |
1816459 |
ccattctgcctaaagaacttctctttcaatttgataaatttccttctttggtatattaag |
1816518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 152
Target Start/End: Complemental strand, 1856585 - 1856524
Alignment:
| Q |
91 |
ccattctgctcaaagaatttctctttcattttgatgaatttccttttatggtatattaagta |
152 |
Q |
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| T |
1856585 |
ccattctgcctaaagaatttctctttcaatttgacaagtttccttttttggtaaattaagta |
1856524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 152
Target Start/End: Complemental strand, 9118208 - 9118107
Alignment:
| Q |
51 |
gtcttctcttgttgagagtttttgttttaaaatcagaccaccattctgctcaaagaatttctctttcattttgatgaatttccttttatggtatattaag |
150 |
Q |
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|||||||||||| ||||||||||| ||||| | ||||||||| || | ||||||||| | ||| | |||||||| ||| ||||| |||||||| ||| |
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| T |
9118208 |
gtcttctcttgtaaagagtttttgtagcaaaatgaaaccaccattttgttgaaagaatttttgttttagtttgatgagttttcttttttggtatatcaag |
9118109 |
T |
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| Q |
151 |
ta |
152 |
Q |
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|| |
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| T |
9118108 |
ta |
9118107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 202
Target Start/End: Complemental strand, 37567564 - 37567453
Alignment:
| Q |
91 |
ccattctgctcaaagaatttctctttcattttgatgaatttccttttatggtatattaagtacgagaatgtcccaaccaaaagaagaataagtgttgctc |
190 |
Q |
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||||||||| ||||||||||||||||| ||||| | ||||||||| |||||||||||||| || | | ||| || || |||| ||||| | ||||| |
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| T |
37567564 |
ccattctgcctaaagaatttctctttcaatttgacaagtttccttttttggtatattaagtaggatattatccacacaaatagaacaataaatactgctc |
37567465 |
T |
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| Q |
191 |
ctactcctgcat |
202 |
Q |
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| T |
37567464 |
ctactcctgcat |
37567453 |
T |
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