View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12891_low_4 (Length: 602)

Name: NF12891_low_4
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12891_low_4
NF12891_low_4
[»] chr3 (15 HSPs)
chr3 (18-584)||(53493699-53494266)
chr3 (130-207)||(16072927-16073004)
chr3 (413-478)||(16073320-16073385)
chr3 (491-584)||(16073456-16073550)
chr3 (22-99)||(16072834-16072911)
chr3 (160-226)||(402458-402524)
chr3 (161-228)||(9832672-9832739)
chr3 (165-228)||(18405752-18405815)
chr3 (328-370)||(16073136-16073178)
chr3 (158-228)||(20170628-20170698)
chr3 (157-219)||(25447158-25447220)
chr3 (179-265)||(31365123-31365208)
chr3 (162-228)||(39980815-39980881)
chr3 (163-228)||(43046751-43046815)
chr3 (163-227)||(26990144-26990208)
[»] chr8 (15 HSPs)
chr8 (160-233)||(38602408-38602481)
chr8 (160-274)||(30251370-30251483)
chr8 (179-228)||(1058012-1058061)
chr8 (152-228)||(43717842-43717918)
chr8 (160-234)||(12496988-12497062)
chr8 (180-274)||(32840922-32841015)
chr8 (160-230)||(35534529-35534599)
chr8 (324-360)||(14280490-14280526)
chr8 (165-215)||(12010979-12011029)
chr8 (162-228)||(36963272-36963338)
chr8 (156-190)||(43043792-43043826)
chr8 (155-191)||(12224809-12224845)
chr8 (184-228)||(28763454-28763498)
chr8 (324-372)||(29168141-29168189)
chr8 (180-228)||(35749506-35749554)
[»] chr7 (11 HSPs)
chr7 (165-228)||(18765370-18765433)
chr7 (160-274)||(5947282-5947395)
chr7 (155-228)||(36517663-36517736)
chr7 (160-228)||(4970708-4970776)
chr7 (160-228)||(18962499-18962567)
chr7 (153-225)||(19302472-19302544)
chr7 (164-228)||(34464141-34464205)
chr7 (325-372)||(4970878-4970925)
chr7 (163-234)||(35056755-35056826)
chr7 (165-225)||(9210910-9210970)
chr7 (170-226)||(43694494-43694550)
[»] chr6 (4 HSPs)
chr6 (155-274)||(848030-848147)
chr6 (163-228)||(10645304-10645369)
chr6 (170-274)||(2455032-2455132)
chr6 (160-217)||(35069528-35069585)
[»] chr2 (11 HSPs)
chr2 (163-228)||(30331837-30331902)
chr2 (161-228)||(26143559-26143624)
chr2 (153-228)||(15305760-15305835)
chr2 (162-228)||(28677577-28677644)
chr2 (160-274)||(45229552-45229665)
chr2 (159-228)||(27317465-27317534)
chr2 (160-230)||(4607009-4607079)
chr2 (166-228)||(31561664-31561726)
chr2 (162-207)||(18179056-18179101)
chr2 (156-205)||(39659421-39659470)
chr2 (160-228)||(42419879-42419947)
[»] chr1 (8 HSPs)
chr1 (163-228)||(50644174-50644239)
chr1 (162-228)||(33204312-33204378)
chr1 (160-228)||(2295182-2295250)
chr1 (166-221)||(15784410-15784465)
chr1 (179-234)||(29904831-29904886)
chr1 (162-228)||(3233933-3233999)
chr1 (155-225)||(36872817-36872887)
chr1 (214-274)||(37473444-37473503)
[»] chr5 (11 HSPs)
chr5 (162-274)||(3932594-3932705)
chr5 (163-228)||(34736446-34736511)
chr5 (160-228)||(15246919-15246987)
chr5 (164-227)||(9107177-9107240)
chr5 (160-274)||(6521118-6521232)
chr5 (239-273)||(34669724-34669758)
chr5 (179-228)||(12425659-12425708)
chr5 (179-228)||(15015929-15015978)
chr5 (163-228)||(39594893-39594958)
chr5 (160-221)||(40426858-40426919)
chr5 (324-360)||(10639898-10639934)
[»] chr4 (12 HSPs)
chr4 (162-274)||(13126494-13126605)
chr4 (160-228)||(21731572-21731640)
chr4 (160-228)||(29388700-29388768)
chr4 (160-274)||(25904139-25904252)
chr4 (162-234)||(8705021-8705093)
chr4 (164-224)||(15173223-15173283)
chr4 (160-228)||(54426129-54426197)
chr4 (162-225)||(27043748-27043811)
chr4 (169-228)||(40174643-40174702)
chr4 (160-227)||(53294030-53294097)
chr4 (162-228)||(49940085-49940151)
chr4 (160-225)||(39691065-39691130)


Alignment Details
Target: chr3 (Bit Score: 524; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 18 - 584
Target Start/End: Original strand, 53493699 - 53494266
Alignment:
Q  18 acatcaaacgacaatatgctatgacatggtagtgcacatcttgttctctaaaagtaattaatcttgcatggtgagaaatttgcaagactgtttggattga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53493699 acatcaaacgacaatatgctatgacatggtagtgcacatcttgttctctaaaagtaattaatcttgcatggtgagaaatttgcaagactgtttggattga 53493798  T
Q  118 ttgtaacaaaagcaaaagggacatgtacattgcacacttagagcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  53493799 ttgtaacaaaagcaaaagggacatgtacattgcacacttagagcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagattgtt 53493898  T
Q  218 tgggagaacttgtaaaaccccactaatgacatttttcataagctttttacagcttatcttatgagttatatgaatgaaaacaactttagcatatatnnnn 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  53493899 tgggagaacttgtaaaaccccactaatgacatttttcataagctttttacagcttatcttatgagttatatgaatgaaaacaactttagcatatataaaa 53493998  T
Q  318 nnnntgtaatttaattttaccttttgctatagaaataggttatgtaagattatacgcgttaataataagatatttatccgaataaacaatgtagtatcgt 417  Q
        ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53493999 acaatgtaatttaattttaccttttactataaaaataggttatgtaagattatacgcgttaataataagatatttatccgaataaacaatgtagtatcgt 53494098  T
Q  418 tcaaaggcaaatgaataaacatgagttatgaaattgggaatattttagaaaggtttgaattgaagttggttccacctcagaatacc-atctttgaaattt 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  53494099 tcaaaggcaaatgaataaacatgagttatgaaattgggaatattttagaaaggtttgaattgaagttggttccacctcagaataccaatctttgaaattt 53494198  T
Q  517 tgatccttccgattgatgagtcttacgccggtctccgtttccacctcgttcttcatcttgtcacctgt 584  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53494199 tgatccttccgattgatgagtcttacgccggtctccgtttccacctcgttcttcatcttgtcacctgt 53494266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 16072927 - 16073004
Alignment:
Q  130 caaaagggacatgtacattgcacacttagagcctgtttggattgatttgtttgagcttatctaattacataagttttg 207  Q
    ||||||||| |||||||||||||||||||  |||||||||||||| || |||||||||||||||| ||||||||||||    
T  16072927 caaaagggatatgtacattgcacacttaggacctgtttggattgacttatttgagcttatctaatgacataagttttg 16073004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 413 - 478
Target Start/End: Original strand, 16073320 - 16073385
Alignment:
Q  413 atcgttcaaaggcaaatgaataaacatgagttatgaaattgggaatattttagaaaggtttgaatt 478  Q
    |||||||||||| ||||| ||||| |||||||||||| ||||| ||||||||||||||||| ||||    
T  16073320 atcgttcaaaggaaaatgtataaaaatgagttatgaatttggggatattttagaaaggtttcaatt 16073385  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 491 - 584
Target Start/End: Original strand, 16073456 - 16073550
Alignment:
Q  491 acctcagaatacca-tctttgaaattttgatccttccgattgatgagtcttacgccggtctccgtttccacctcgttcttcatcttgtcacctgt 584  Q
    ||||| |||||||| |||| |||||||| ||||||||  ||||||||||||| |||||||||  | ||||||| ||| |||||||| ||||||||    
T  16073456 acctcggaataccactcttcgaaattttcatccttcctgttgatgagtcttaagccggtctctatatccaccttgttattcatcttctcacctgt 16073550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 16072834 - 16072911
Alignment:
Q  22 caaacgacaatatgctatgacatggtagtgcacatcttgttctctaaaagtaattaatcttgcatggtgagaaatttg 99  Q
    ||||||||  ||||||||||||||||||||||| |  | |||  ||||||||||| ||||||||||||||||| ||||    
T  16072834 caaacgacggtatgctatgacatggtagtgcacgttattttccttaaaagtaattgatcttgcatggtgagaagtttg 16072911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 226
Target Start/End: Original strand, 402458 - 402524
Alignment:
Q  160 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaac 226  Q
    |||||||||| ||||  | |||||| ||||| | | |||||||||||||||||||||||||||||||    
T  402458 gcctgtttgggttgacctatttgagtttatcaactaacataagttttgcaagactgtttgggagaac 402524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 228
Target Start/End: Original strand, 9832672 - 9832739
Alignment:
Q  161 cctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 228  Q
    ||||||| |||||| || ||||||||||| || | ||||||||||||  | |||||||||||||||||    
T  9832672 cctgtttagattgacttatttgagcttatttattgacataagttttgtcaaactgtttgggagaactt 9832739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 228
Target Start/End: Original strand, 18405752 - 18405815
Alignment:
Q  165 tttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 228  Q
    ||||||||| ||| |||||||||||||| | ||||||||||||  ||||||||||  |||||||    
T  18405752 tttggattggtttatttgagcttatctactgacataagttttgtgagactgtttgcaagaactt 18405815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 328 - 370
Target Start/End: Original strand, 16073136 - 16073178
Alignment:
Q  328 ttaattttaccttttgctatagaaataggttatgtaagattat 370  Q
    ||||||||| |||||||||||||||||| ||||| ||||||||    
T  16073136 ttaattttaacttttgctatagaaatagcttatgcaagattat 16073178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 158 - 228
Target Start/End: Original strand, 20170628 - 20170698
Alignment:
Q  158 gagcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 228  Q
    ||||||||||||||||  || |||||||||||||| | |||||||||| |  ||||||||||  |||||||    
T  20170628 gagcctgtttggattggcttatttgagcttatctagtgacataagtttagtgagactgtttgttagaactt 20170698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 157 - 219
Target Start/End: Original strand, 25447158 - 25447220
Alignment:
Q  157 agagcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttg 219  Q
    |||| ||||||||||||| || |||||| ||||||| | ||||||||||||  ||||||||||    
T  25447158 agagtctgtttggattgacttatttgagtttatctactgacataagttttgtgagactgtttg 25447220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 179 - 265
Target Start/End: Original strand, 31365123 - 31365208
Alignment:
Q  179 tttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaaccccactaatgacatttttcataagcttttt 265  Q
    |||||||||||||| |  |||||||||||  ||||||||||||||||||| | |||  |  || |||||| ||||||||||||||||    
T  31365123 tttgagcttatctattggcataagttttgtgagactgtttgggagaacttatgaaa-gcagcttatgacaattttcataagcttttt 31365208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 39980881 - 39980815
Alignment:
Q  162 ctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 228  Q
    ||||||||||||  ||||||||||||||||| |  |||||||||||  |||||||||  ||||||||    
T  39980881 ctgtttggattggcttgtttgagcttatctactagcataagttttgtgagactgtttaagagaactt 39980815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 43046815 - 43046751
Alignment:
Q  163 tgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 228  Q
    ||||| |||||| || ||||| |||||||| ||||||| ||||||  |||||||||||||||||||    
T  43046815 tgtttagattgacttatttgaacttatcta-ttacatatgttttgtgagactgtttgggagaactt 43046751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 26990144 - 26990208
Alignment:
Q  163 tgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaact 227  Q
    |||||||||||| || |||||||||||||| | ||||| | ||||| | | ||||||||||||||    
T  26990144 tgtttggattgacttatttgagcttatctactgacataggctttgcgatattgtttgggagaact 26990208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 233
Target Start/End: Complemental strand, 38602481 - 38602408
Alignment:
Q  160 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaa 233  Q
    ||||||||||||||| || |||||||||||||| | ||||||||||||  || |||||||||||||||| ||||    
T  38602481 gcctgtttggattgacttatttgagcttatctactgacataagttttgtgaggctgtttgggagaacttataaa 38602408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 160 - 274
Target Start/End: Original strand, 30251370 - 30251483
Alignment:
Q  160 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaaccccactaatgacatttttcataag 259  Q
    ||||||||||||||  || |||||||||||||| | |||||||||| |  |||||||||||||||||||   |||  |  || ||  |||||||||||||    
T  30251370 gcctgtttggattggcttatttgagcttatctactgacataagtttcgtgagactgtttgggagaacttacgaaa-acagcttattgcatttttcataag 30251468  T
Q  260 ctttttacagcttat 274  Q
    |||||||||||||||    
T  30251469 ctttttacagcttat 30251483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 1058012 - 1058061
Alignment:
Q  179 tttgagcttatctaattacataagttttgcaagactgtttgggagaactt 228  Q
    |||||||||||||| ||||||||||||||  |||||||||||||||||||    
T  1058012 tttgagcttatctacttacataagttttgtgagactgtttgggagaactt 1058061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 43717842 - 43717918
Alignment:
Q  152 cacttagagcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 228  Q
    ||||||| |||| |||||||||  || |||||||||||||| | ||||||||||||  ||||| |||||||||||||    
T  43717842 cacttagggcctatttggattggcttatttgagcttatctattgacataagttttgtgagactatttgggagaactt 43717918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 12496988 - 12497062
Alignment:
Q  160 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaa 234  Q
    |||| ||||||||||||| |||||||||||||  |  |||||||||||  |||||||||| |||||||| |||||    
T  12496988 gcctatttggattgatttatttgagcttatctcctggcataagttttgtgagactgtttgagagaacttctaaaa 12497062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 274
Target Start/End: Original strand, 32840922 - 32841015
Alignment:
Q  180 ttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaaccccactaatgacatttttcataagctttttacagcttat 274  Q
    ||||||||||||| | ||| ||||||||| ||||||||||||||||||| | |||  | ||| |||||||| |||||||| | ||| ||||||||    
T  32840922 ttgagcttatctactcacacaagttttgcgagactgtttgggagaacttatgaaa-acaacttatgacattgttcataagttgttttcagcttat 32841015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 35534529 - 35534599
Alignment:
Q  160 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgt 230  Q
    |||||||| || ||| || |||||||||||||| | ||||||||||||  |||||||||| ||||||||||    
T  35534529 gcctgtttagaatgacttatttgagcttatctactaacataagttttgtgagactgtttgagagaacttgt 35534599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 360
Target Start/End: Original strand, 14280490 - 14280526
Alignment:
Q  324 taatttaattttaccttttgctatagaaataggttat 360  Q
    ||||||||||||| |||||||||||||||||||||||    
T  14280490 taatttaattttatcttttgctatagaaataggttat 14280526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 12011029 - 12010979
Alignment:
Q  165 tttggattgatttgtttgagcttatctaattacataagttttgcaagactg 215  Q
    |||||||||| || |||||||||||||||||||||| ||||| | ||||||    
T  12011029 tttggattgacttatttgagcttatctaattacatatgttttacgagactg 12010979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 36963272 - 36963338
Alignment:
Q  162 ctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 228  Q
    ||||||||||||  || |||||||| ||||| |  |||||||||||  |||||||||||||||||||    
T  36963272 ctgtttggattggcttatttgagctaatctactggcataagttttgtgagactgtttgggagaactt 36963338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 156 - 190
Target Start/End: Complemental strand, 43043826 - 43043792
Alignment:
Q  156 tagagcctgtttggattgatttgtttgagcttatc 190  Q
    ||||||||||||||||||| |||||||||||||||    
T  43043826 tagagcctgtttggattgacttgtttgagcttatc 43043792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 155 - 191
Target Start/End: Original strand, 12224809 - 12224845
Alignment:
Q  155 ttagagcctgtttggattgatttgtttgagcttatct 191  Q
    |||||||||||||||||||| || |||||||||||||    
T  12224809 ttagagcctgtttggattgaattatttgagcttatct 12224845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 28763498 - 28763454
Alignment:
Q  184 gcttatctaattacataagttttgcaagactgtttgggagaactt 228  Q
    ||||||||| | ||||||||||||  |||||||||||||||||||    
T  28763498 gcttatctagtaacataagttttgtgagactgtttgggagaactt 28763454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 324 - 372
Target Start/End: Original strand, 29168141 - 29168189
Alignment:
Q  324 taatttaattttaccttttgctatagaaataggttatgtaagattatac 372  Q
    |||||| |||||| |||||||||||||||||| |||||| || ||||||    
T  29168141 taattttattttatcttttgctatagaaatagcttatgtgagcttatac 29168189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 35749506 - 35749554
Alignment:
Q  180 ttgagcttatctaattacataagttttgcaagactgtttgggagaactt 228  Q
    ||||||||||||| | ||||||||||||| || ||||||| ||||||||    
T  35749506 ttgagcttatctattgacataagttttgcgaggctgtttgagagaactt 35749554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 165 - 228
Target Start/End: Complemental strand, 18765433 - 18765370
Alignment:
Q  165 tttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 228  Q
    ||||||||| ||| |||||||||||||| | ||||||||||||  |||||||||||||||||||    
T  18765433 tttggattgctttatttgagcttatctattgacataagttttgtgagactgtttgggagaactt 18765370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 160 - 274
Target Start/End: Complemental strand, 5947395 - 5947282
Alignment:
Q  160 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaaccccactaatgacatttttcataag 259  Q
    ||||||||||||||  || |||||||||||||| |   |||||||||   ||||||||||| ||||||| | |||||   || ||||||||||||||| |    
T  5947395 gcctgtttggattggcttatttgagcttatctattggtataagttttatgagactgtttggaagaacttttgaaaccag-cttatgacatttttcatatg 5947297  T
Q  260 ctttttacagcttat 274  Q
    |||||||||||||||    
T  5947296 ctttttacagcttat 5947282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 155 - 228
Target Start/End: Complemental strand, 36517736 - 36517663
Alignment:
Q  155 ttagagcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 228  Q
    |||| ||||||||||||| |||| |||||||||| ||| |  ||||||||||  ||||||||||||||||||||    
T  36517736 ttagggcctgtttggattcatttatttgagcttagctactggcataagttttctaagactgtttgggagaactt 36517663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 4970708 - 4970776
Alignment:
Q  160 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 228  Q
    ||||||||||||||| || |||||||||||||  | |||||||| |||  |||||||||||||||||||    
T  4970708 gcctgtttggattgacttatttgagcttatctcgtgacataagtcttgtgagactgtttgggagaactt 4970776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 18962499 - 18962567
Alignment:
Q  160 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 228  Q
    ||||||||||||||| || || || |||||||| | ||||||||||||  ||||||||| |||||||||    
T  18962499 gcctgtttggattgagttattcgatcttatctactgacataagttttgttagactgttttggagaactt 18962567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 225
Target Start/End: Original strand, 19302472 - 19302544
Alignment:
Q  153 acttagagcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaa 225  Q
    ||||||| |||||||| ||||| || |||||||||||||| | ||||||||||||  ||| | ||||||||||    
T  19302472 acttagaacctgtttgaattgacttatttgagcttatctactgacataagttttgtgagaatatttgggagaa 19302544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 34464141 - 34464205
Alignment:
Q  164 gtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 228  Q
    |||||||||||||| |||||| ||||||| | |||||| |||| ||||||| |||||||| ||||    
T  34464141 gtttggattgatttatttgagtttatctattgacataaattttacaagactttttgggaggactt 34464205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 372
Target Start/End: Original strand, 4970878 - 4970925
Alignment:
Q  325 aatttaattttaccttttgctatagaaataggttatgtaagattatac 372  Q
    ||||| |||||| |||||||||||||||||| ||||||||| ||||||    
T  4970878 aattttattttatcttttgctatagaaatagcttatgtaagcttatac 4970925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 35056826 - 35056755
Alignment:
Q  163 tgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaa 234  Q
    |||||||||||| || | |||||||||||| | ||||| |||| | || ||||||||||||||||| |||||    
T  35056826 tgtttggattgagttttctgagcttatctactaacatacgtttagtaaaactgtttgggagaacttataaaa 35056755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 9210970 - 9210910
Alignment:
Q  165 tttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaa 225  Q
    |||||||||| || |||||||||||||| | | |||||||||   ||||||||||||||||    
T  9210970 tttggattgacttatttgagcttatctactgatataagttttctgagactgtttgggagaa 9210910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 43694494 - 43694550
Alignment:
Q  170 attgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaac 226  Q
    |||||||| |||||| ||||||| | | ||||||||| | |||||||||||||||||    
T  43694494 attgatttatttgagtttatctactaatataagttttacgagactgtttgggagaac 43694550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 274
Target Start/End: Complemental strand, 848147 - 848030
Alignment:
Q  155 ttagagcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaaccccactaatgacatttttc 254  Q
    |||| ||||||||||||||  || |||||||||||||| |  |||||||||||  ||||||||||| ||||||| |||||  |  || ||||||||||||    
T  848147 ttagggcctgtttggattgccttatttgagcttatcta-tagcataagttttgtgagactgtttggaagaacttataaaa-actgcttatgacatttttc 848050  T
Q  255 ataagctttttacagcttat 274  Q
     |||||||||| ||||||||    
T  848049 ttaagcttttttcagcttat 848030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 10645304 - 10645369
Alignment:
Q  163 tgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 228  Q
    |||||||||||  |  |||||| ||||||||| |||||||||||| ||||||||||||||||||||    
T  10645304 tgtttggattggctaatttgaggttatctaatgacataagttttgtaagactgtttgggagaactt 10645369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 274
Target Start/End: Complemental strand, 2455132 - 2455032
Alignment:
Q  170 attgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaaccccactaatgacatttttcataagctttttacag 269  Q
    |||| ||| ||||| |||||||| | ||||||||||||  ||||||||||||||||||| | |||    ||| |||||||| ||||||| || ||| |||    
T  2455132 attggtttatttgaacttatctactaacataagttttgtgagactgtttgggagaacttctgaaa----acttatgacattgttcataacctgttttcag 2455037  T
Q  270 cttat 274  Q
    |||||    
T  2455036 cttat 2455032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 35069528 - 35069585
Alignment:
Q  160 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtt 217  Q
    ||||||||| ||||  || |||||||||||||| | |||||||||||| |||||||||    
T  35069528 gcctgtttgtattggcttatttgagcttatctactgacataagttttgtaagactgtt 35069585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 30331902 - 30331837
Alignment:
Q  163 tgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 228  Q
    |||||||||||| || ||| |||||||||| | ||||||||||||  |||||||||||||||||||    
T  30331902 tgtttggattgacttatttcagcttatctactgacataagttttgtgagactgtttgggagaactt 30331837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 161 - 228
Target Start/End: Original strand, 26143559 - 26143624
Alignment:
Q  161 cctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 228  Q
    |||||||||||||  ||||||||||||||||| | |||||| |||||  |||||||||||||||||||    
T  26143559 cctgtttggattggcttgtttgagcttatctactgacataaattttg--agactgtttgggagaactt 26143624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 153 - 228
Target Start/End: Complemental strand, 15305835 - 15305760
Alignment:
Q  153 acttagagcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 228  Q
    |||||| ||||||||||||||  || |||||||||||||| | ||||||||||||  | ||||||||| |||||||    
T  15305835 acttagggcctgtttggattggcttatttgagcttatctattgacataagttttgtgaaactgtttggtagaactt 15305760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 28677577 - 28677644
Alignment:
Q  162 ctgtttggattgatttgtttgagcttatctaattacataagttttgc-aagactgtttgggagaactt 228  Q
    |||||||||||||||| ||||||||||| || || |||||||  ||| ||||||||||||||||||||    
T  28677577 ctgtttggattgatttttttgagcttatttacttgcataagtactgctaagactgtttgggagaactt 28677644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 274
Target Start/End: Complemental strand, 45229665 - 45229552
Alignment:
Q  160 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaaccccactaatgacatttttcataag 259  Q
    |||||||||||||| ||  |||||||||||||| |  |||||||| ||| | || |||||||||||||| | |||   | || |||||||||||||| ||    
T  45229665 gcctgtttggattggttgatttgagcttatctactggcataagttatgccacaccgtttgggagaacttatgaaaagac-cttatgacatttttcattag 45229567  T
Q  260 ctttttacagcttat 274  Q
    |||||| ||||||||    
T  45229566 cttttttcagcttat 45229552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 159 - 228
Target Start/End: Complemental strand, 27317534 - 27317465
Alignment:
Q  159 agcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 228  Q
    |||||||||||||||| || ||||||||||||||   |||||||||||   |||||||||| ||||||||    
T  27317534 agcctgtttggattgacttatttgagcttatctaccgacataagttttatgagactgtttgagagaactt 27317465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 4607079 - 4607009
Alignment:
Q  160 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgt 230  Q
    ||||||||||||||  || ||||||||||||||   | ||||||||||  ||||| |||||||||||||||    
T  4607079 gcctgtttggattggcttatttgagcttatctaccaatataagttttgtgagactatttgggagaacttgt 4607009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 228
Target Start/End: Original strand, 31561664 - 31561726
Alignment:
Q  166 ttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 228  Q
    ||||||||| || |||||| ||||||| | |||||||||||| || ||||||||||| |||||    
T  31561664 ttggattgacttatttgagattatctactaacataagttttgtaaaactgtttgggaaaactt 31561726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 18179101 - 18179056
Alignment:
Q  162 ctgtttggattgatttgtttgagcttatctaattacataagttttg 207  Q
    ||||||||||||| || |||||||||||||| | ||||||||||||    
T  18179101 ctgtttggattgacttatttgagcttatctactaacataagttttg 18179056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 39659421 - 39659470
Alignment:
Q  156 tagagcctgtttggattgatttgtttgagcttatctaattacataagttt 205  Q
    ||||||||||||||||||  ||| ||||||||||||| | ||||||||||    
T  39659421 tagagcctgtttggattggcttgcttgagcttatctactgacataagttt 39659470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 42419947 - 42419879
Alignment:
Q  160 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 228  Q
    |||| |||||||||| || |||||| ||||||  | |||||||||||   |||||||||||||||||||    
T  42419947 gcctttttggattgacttatttgagtttatcttctgacataagttttttgagactgtttgggagaactt 42419879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 50644174 - 50644239
Alignment:
Q  163 tgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 228  Q
    |||||||||||| || |||||||||||||| | ||||| ||||||  |||||||||||||||||||    
T  50644174 tgtttggattgacttatttgagcttatctactaacatatgttttgtgagactgtttgggagaactt 50644239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 33204312 - 33204378
Alignment:
Q  162 ctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 228  Q
    |||||| ||| || || |||||||||||||| | ||||||||||||  |||||||||||||||||||    
T  33204312 ctgtttagatcgacttatttgagcttatctactgacataagttttgtgagactgtttgggagaactt 33204378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 2295250 - 2295182
Alignment:
Q  160 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 228  Q
    ||||||||| ||||  || |||||||||||||| |  |||||||||||  |||||||||||||||||||    
T  2295250 gcctgtttgaattggcttatttgagcttatctactggcataagttttgtgagactgtttgggagaactt 2295182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 221
Target Start/End: Complemental strand, 15784465 - 15784410
Alignment:
Q  166 ttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttggg 221  Q
    |||||| || || |||||||||||||| | |||||||||||| |||||||||||||    
T  15784465 ttggatcgacttatttgagcttatctactaacataagttttgtaagactgtttggg 15784410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 29904886 - 29904831
Alignment:
Q  179 tttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaa 234  Q
    |||||||||||||| || |||||||||||  |||||||||| |||||||| |||||    
T  29904886 tttgagcttatctacttgcataagttttgtgagactgtttgagagaacttataaaa 29904831  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 3233933 - 3233999
Alignment:
Q  162 ctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 228  Q
    ||||||||||||| || |||||||||||||| |  | |||||||||  |||||||| ||||||||||    
T  3233933 ctgtttggattgacttatttgagcttatctagtgccgtaagttttgtgagactgttagggagaactt 3233999  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 36872887 - 36872817
Alignment:
Q  155 ttagagcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaa 225  Q
    |||| ||||||||||||||  || ||| |||||| ||||  ||||||||||||| ||||||||| ||||||    
T  36872887 ttagggcctgtttggattggcttatttaagcttaactaacaacataagttttgcgagactgttttggagaa 36872817  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 214 - 274
Target Start/End: Complemental strand, 37473503 - 37473444
Alignment:
Q  214 tgtttgggagaacttgtaaaaccccactaatgacatttttcataagctttttacagcttat 274  Q
    ||||||||||||||| | ||| |  ||| ||||||||||||||||||||||| ||||||||    
T  37473503 tgtttgggagaacttttgaaaaca-acttatgacatttttcataagctttttccagcttat 37473444  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 162 - 274
Target Start/End: Original strand, 3932594 - 3932705
Alignment:
Q  162 ctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaaccccactaatgacatttttcataagct 261  Q
    ||||||||||||| |  |||||||||||||||  ||||||| ||||  |||||||||| || |||||| ||||  |  || |||| | ||||||||||||    
T  3932594 ctgtttggattgactaatttgagcttatctaacaacataagctttgtgagactgtttgagaaaacttgcaaaa-acagcttatgataattttcataagct 3932692  T
Q  262 ttttacagcttat 274  Q
    |||||||||||||    
T  3932693 ttttacagcttat 3932705  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 34736446 - 34736511
Alignment:
Q  163 tgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 228  Q
    |||||||||||| || |||||||||||||  | ||||||||||||  |||| ||||||||||||||    
T  34736446 tgtttggattgacttatttgagcttatctggtgacataagttttgtgagacagtttgggagaactt 34736511  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 15246987 - 15246919
Alignment:
Q  160 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 228  Q
    |||||||||||||  ||| |||||||||||||| | |||||||||||   ||| |||||||||||||||    
T  15246987 gcctgtttggatttgtttatttgagcttatctactgacataagttttattagaatgtttgggagaactt 15246919  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 9107240 - 9107177
Alignment:
Q  164 gtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaact 227  Q
    ||||||||||| || |||||| ||||||| | ||||||||||||  ||| ||||||||||||||    
T  9107240 gtttggattgacttatttgagtttatctagtgacataagttttgtgagaatgtttgggagaact 9107177  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 160 - 274
Target Start/End: Complemental strand, 6521232 - 6521118
Alignment:
Q  160 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaaccccactaatgacatttttcataag 259  Q
    ||||||||||||||| || || ||||| | ||| | ||||| ||||||  ||| ||||||||||||||| | ||| |  ||| |||||| |||||| |||    
T  6521232 gcctgtttggattgacttattagagctgaactactgacatatgttttgtgagattgtttgggagaacttatgaaaacggacttatgacaattttcacaag 6521133  T
Q  260 ctttttacagcttat 274  Q
    |||||| | ||||||    
T  6521132 cttttttcggcttat 6521118  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 273
Target Start/End: Original strand, 34669724 - 34669758
Alignment:
Q  239 actaatgacatttttcataagctttttacagctta 273  Q
    ||||||||||||||||||||||||||| |||||||    
T  34669724 actaatgacatttttcataagcttttttcagctta 34669758  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 12425708 - 12425659
Alignment:
Q  179 tttgagcttatctaattacataagttttgcaagactgtttgggagaactt 228  Q
    |||||||||||||| |  |||||||||||  |||||||||||||||||||    
T  12425708 tttgagcttatctactgtcataagttttgtgagactgtttgggagaactt 12425659  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 15015978 - 15015929
Alignment:
Q  179 tttgagcttatctaattacataagttttgcaagactgtttgggagaactt 228  Q
    |||||||||||||| | ||||||| ||||  |||||||||||||||||||    
T  15015978 tttgagcttatctactgacataagctttgtgagactgtttgggagaactt 15015929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 39594958 - 39594893
Alignment:
Q  163 tgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 228  Q
    |||||||||||| || ||||||||||||||   ||||||||||||  ||| ||||||||| |||||    
T  39594958 tgtttggattgacttatttgagcttatctaccgacataagttttgttagattgtttgggacaactt 39594893  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 40426919 - 40426858
Alignment:
Q  160 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttggg 221  Q
    |||||||| | |||| || |||||||||||||||| |||||| |||||  ||||||||||||    
T  40426919 gcctgttttggttgacttatttgagcttatctaatgacataaattttgtgagactgtttggg 40426858  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 324 - 360
Target Start/End: Complemental strand, 10639934 - 10639898
Alignment:
Q  324 taatttaattttaccttttgctatagaaataggttat 360  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  10639934 taatttaattttatcttttgctatagaaatagcttat 10639898  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 162 - 274
Target Start/End: Original strand, 13126494 - 13126605
Alignment:
Q  162 ctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaaccccactaatgacatttttcataagct 261  Q
    ||||||||||||  || ||| |||||| ||| | ||||||||||||  ||||||||||| ||||||| |||||  |  || ||||||||| |||||||||    
T  13126494 ctgtttggattggcttattttagcttacctactaacataagttttgtgagactgtttggaagaacttataaaa-acagcttatgacatttatcataagct 13126592  T
Q  262 ttttacagcttat 274  Q
    |||| ||||||||    
T  13126593 tttttcagcttat 13126605  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 21731572 - 21731640
Alignment:
Q  160 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 228  Q
    |||||||||||||| ||| ||||||| |||||| | ||||||||||||  ||| |||||||||||||||    
T  21731572 gcctgtttggattggtttatttgagcatatctactgacataagttttgtgagattgtttgggagaactt 21731640  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 29388768 - 29388700
Alignment:
Q  160 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 228  Q
    |||||||||| |||| || ||||| |||||||| | |||||||||||| |||| |||||||||||||||    
T  29388768 gcctgtttgggttgacttatttgaccttatctactaacataagttttgtaagattgtttgggagaactt 29388700  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 274
Target Start/End: Original strand, 25904139 - 25904252
Alignment:
Q  160 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaaccccactaatgacatttttcataag 259  Q
    |||||||| | |||| || |||||||||||| ||| |||||| |||||  ||||||||||||||| ||| | |||  |  || ||| |||||||||||||    
T  25904139 gcctgttttggttgacttatttgagcttatccaatgacataaattttgtgagactgtttgggagagcttatgaaa-acagcttatgccatttttcataag 25904237  T
Q  260 ctttttacagcttat 274  Q
    |||||| ||||||||    
T  25904238 cttttttcagcttat 25904252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 8705093 - 8705021
Alignment:
Q  162 ctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaa 234  Q
    ||||||||||||  |  |||||||||||||| | ||||||||||||  |||||| |||||||||||| |||||    
T  8705093 ctgtttggattggctcatttgagcttatctattgacataagttttgtgagactgattgggagaacttataaaa 8705021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 15173223 - 15173283
Alignment:
Q  164 gtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggaga 224  Q
    ||||||||||| || ||||| |||||||| | ||||||||||||  |||||||||||||||    
T  15173223 gtttggattgacttatttgaacttatctactgacataagttttgtgagactgtttgggaga 15173283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 54426197 - 54426129
Alignment:
Q  160 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 228  Q
    ||||||||||||||  || |||||||||||||| |  |||||||||||  |||||| ||||||||||||    
T  54426197 gcctgtttggattggcttatttgagcttatctactggcataagttttgtgagactgcttgggagaactt 54426129  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 225
Target Start/End: Original strand, 27043748 - 27043811
Alignment:
Q  162 ctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaa 225  Q
    ||||||||||||| || |||||||||||||| | ||||||||||||  | ||||||||| ||||    
T  27043748 ctgtttggattgacttatttgagcttatctactgacataagttttgtgaaactgtttggaagaa 27043811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 40174702 - 40174643
Alignment:
Q  169 gattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 228  Q
    ||||||||| |||||| ||||||| | ||||||||||||  ||||||||||||| |||||    
T  40174702 gattgatttatttgagtttatctactaacataagttttgtgagactgtttgggataactt 40174643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 53294030 - 53294097
Alignment:
Q  160 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaact 227  Q
    ||||||||||||||| |  |||| ||||||||| | |||| ||||||| |||||||||||||| ||||    
T  53294030 gcctgtttggattgactaatttgtgcttatctactgacatgagttttgtaagactgtttgggaaaact 53294097  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 49940085 - 49940151
Alignment:
Q  162 ctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 228  Q
    ||||||||||||| || |||||||||| ||  | ||||||||||||  |||||||||| ||||||||    
T  49940085 ctgtttggattgacttatttgagcttacctgctaacataagttttgtgagactgtttgagagaactt 49940151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 225
Target Start/End: Original strand, 39691065 - 39691130
Alignment:
Q  160 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaa 225  Q
    ||||||||| ||||| || |||||||||||||| |  |||||||||||  |||||||||| |||||    
T  39691065 gcctgtttgaattgacttatttgagcttatctactagcataagttttgtgagactgtttgagagaa 39691130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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