View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_low_40 (Length: 365)
Name: NF12891_low_40
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_low_40 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 327
Target Start/End: Original strand, 32313588 - 32313896
Alignment:
| Q |
19 |
aatatcgaatctacatacatatannnnnnnggtagacaaaatgacaacaatcattaaaaacttacacataaggaattggggttcgaaccacaatcatgac |
118 |
Q |
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| T |
32313588 |
aatatcgaatctacatacatatatttttttggtagataaaatgacagcaatcattaaaaacttacacataaggaattggggttcgaaccacaatcatgac |
32313687 |
T |
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| Q |
119 |
gtccaacttaagaatttcaacatttttccgattgagttataggattgttggaccttttaacatattttatccatcaaatatctataaactaaaatccgag |
218 |
Q |
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| T |
32313688 |
gtccaacttaagaatttcaacattttttcgattgagttataggattgttggaccttttaacatattttatccatcaaatatctatagactaaaatccgag |
32313787 |
T |
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| Q |
219 |
gtttagatcacaagagatatatatgttttaatagatctttattgtcaaaccacatcttaaagaactggaaagatattcattttttatgaactagaaatat |
318 |
Q |
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| T |
32313788 |
gtttagatcacaagagatatatgtgttttaatagatctttattgtcaaaccacatcttaaagaactggaaagatattctttttttatgaactagaaatat |
32313887 |
T |
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| Q |
319 |
ctgctgatt |
327 |
Q |
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| T |
32313888 |
ctgctgatt |
32313896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 32566656 - 32566718
Alignment:
| Q |
180 |
atattttatccatcaaatatctataaactaaaatccgaggtttagatcacaagagatatatat |
242 |
Q |
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| T |
32566656 |
atattttatccatcaaatatctacagactaagatctggggtttagatcataatatatatatat |
32566718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 19369 - 19418
Alignment:
| Q |
96 |
ggggttcgaaccacaatcatgacgtccaacttaagaatttcaacattttt |
145 |
Q |
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| T |
19369 |
ggggttcgaaccccaatcatgacgtccggcctaacaatttcaacattttt |
19418 |
T |
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