View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12891_low_43 (Length: 351)

Name: NF12891_low_43
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12891_low_43
NF12891_low_43
[»] chr2 (2 HSPs)
chr2 (73-345)||(36612446-36612718)
chr2 (73-345)||(36620297-36620569)


Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 73 - 345
Target Start/End: Complemental strand, 36612718 - 36612446
Alignment:
Q  73 tgagaggcagttgaaagaccagctgtcggtgtatccccctctaaccataaataaaccatttccctcttactttctctctcttcatcttagagagagaaac 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36612718 tgagaggcagttgaaagaccagctgtcggtgtatccccctctaaccataaataaaccatttccctcttactttctctctcttcatcttagagagagaaac 36612619  T
Q  173 cacttcttcttctcgaattcnnnnnnntcaaaccgtaatcaacgcaattactccacaaattaatcacactgtttacactatcacttttaccacaaccaac 272  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36612618 cacttcttcttctcgaattcaaaaatatcaaaccgtaatcaacgcaattactccacaaattaatcacactgtttacactatcacttttaccacaaccaac 36612519  T
Q  273 ataattaatcatcattgccagcgtgaaagtgagaaacagttgagtataaccacaaaacgttcattcatctctc 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36612518 ataattaatcatcattgccagcgtgaaagtgagaaacagttgagtataaccacaaaacgttcattcatttctc 36612446  T

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Target: chr2; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 73 - 345
Target Start/End: Complemental strand, 36620569 - 36620297
Alignment:
Q  73 tgagaggcagttgaaagaccagctgtcggtgtatccccctctaaccataaataaaccatttccctcttactttctctctcttcatcttagagagagaaac 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36620569 tgagaggcagttgaaagaccagctgtcggtgtatccccctctaaccataaataaaccatttccctcttactttctctctcttcatcttagagagagaaac 36620470  T
Q  173 cacttcttcttctcgaattcnnnnnnntcaaaccgtaatcaacgcaattactccacaaattaatcacactgtttacactatcacttttaccacaaccaac 272  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36620469 cacttcttcttctcgaattcaaaaatatcaaaccgtaatcaacgcaattactccacaaattaatcacactgtttacactatcacttttaccacaaccaac 36620370  T
Q  273 ataattaatcatcattgccagcgtgaaagtgagaaacagttgagtataaccacaaaacgttcattcatctctc 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36620369 ataattaatcatcattgccagcgtgaaagtgagaaacagttgagtataaccacaaaacgttcattcatttctc 36620297  T

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