View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_low_44 (Length: 348)
Name: NF12891_low_44
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 14 - 327
Target Start/End: Complemental strand, 30710585 - 30710272
Alignment:
| Q |
14 |
cagagatacaacaagaggaggaagaagggtttggctaggaacatttaatagtgctgaagatgctgctttagcttatgatcaagctgcatttttaatgaga |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30710585 |
cagagatacaacaagaggaggaagaagggtttggctaggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgcattttcaatgaga |
30710486 |
T |
|
| Q |
114 |
ggttataatgctttcctcaatttttctttcgaaagcgtcaaagaatctttgcgagagattcaatatgattgcagaaaagggtcttcacctgcacttgcac |
213 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30710485 |
ggtaataatgctttcctcaatttttctttcgaaagcgtcaaagaatctttgcaagagattcaatatgattgcagaaaagggtcttcacctgcacttgcac |
30710386 |
T |
|
| Q |
214 |
tcaaagagagacactacaaccaaagaaaattaaggtcatcgtcaaaaagtaaaaagggtaaagcagggaaatttcaagaatcagcagtggtatcatcaag |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
30710385 |
tcaaagagagacactacaaccaaagaaaattaaggtcatcgtcaaaaagtaaaaagggtaaagcagggaaatttcaagaatcagcagagggatcatcaag |
30710286 |
T |
|
| Q |
314 |
ttttttggtgttag |
327 |
Q |
| |
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| | |||||||||| |
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| T |
30710285 |
tgtgttggtgttag |
30710272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 14 - 229
Target Start/End: Complemental strand, 30689816 - 30689601
Alignment:
| Q |
14 |
cagagatacaacaagaggaggaagaagggtttggctaggaacatttaatagtgctgaagatgctgctttagcttatgatcaagctgcatttttaatgaga |
113 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30689816 |
cagagacacaacaagaggaggaagaagggtttggcttggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgcattttcaatgaga |
30689717 |
T |
|
| Q |
114 |
ggttataatgctttcctcaatttttctttcgaaagcgtcaaagaatctttgcgagagattcaatatgattgcagaaaagggtcttcacctgcacttgcac |
213 |
Q |
| |
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|||||| ||||| | |||||||||||| | |||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
30689716 |
ggttatgatgctgtgctcaatttttctgttcaaagggtcaaagaatctttgcaagagattcaatatgattgcagagaagggtcttcacctgcacttgcac |
30689617 |
T |
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| Q |
214 |
tcaaagagagacacta |
229 |
Q |
| |
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| |||||||| ||||| |
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| T |
30689616 |
taaaagagaggcacta |
30689601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 15 - 229
Target Start/End: Complemental strand, 30718858 - 30718644
Alignment:
| Q |
15 |
agagatacaacaagaggaggaagaagggtttggctaggaacatttaatagtgctgaagatgctgctttagcttatgatcaagctgcatttttaatgagag |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30718858 |
agagatacaacaagaggaggaagaagggtttggcttggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgcattttcaatgagag |
30718759 |
T |
|
| Q |
115 |
gttataatgctttcctcaatttttctttcgaaagcgtcaaagaatctttgcgagagattcaatatgattgcagaaaagggtcttcacctgcacttgcact |
214 |
Q |
| |
|
||||| ||||| | |||||||||||| | |||| |||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
30718758 |
gttatgatgctgtgctcaatttttctgttcaaagggtcaaagaatctttgcaagcgattcaatatgattgcagagaagggtcttcacctgcacttgcact |
30718659 |
T |
|
| Q |
215 |
caaagagagacacta |
229 |
Q |
| |
|
|||||||| ||||| |
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| T |
30718658 |
aaaagagaggcacta |
30718644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 14 - 242
Target Start/End: Complemental strand, 30698702 - 30698474
Alignment:
| Q |
14 |
cagagatacaacaagaggaggaagaagggtttggctaggaacatttaatagtgctgaagatgctgctttagcttatgatcaagctgcatttttaatgaga |
113 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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|
| T |
30698702 |
cagagatacaacaagaggaggaagaagagtttggctaggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgcattctcaatgaga |
30698603 |
T |
|
| Q |
114 |
ggttataatgctttcctcaatttttctttcgaaagcgtcaaagaatctttgcgagagattcaatatgattgcagaaaagggtcttcacctgcacttgcac |
213 |
Q |
| |
|
||| |||||||| | |||||||||||| | |||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
30698602 |
ggtaataatgctgtgctcaatttttctgttcaaagggtcaaagaatctttgcaagagattcaatatgattgcagaaaaggatcttcacctgcacttgcac |
30698503 |
T |
|
| Q |
214 |
tcaaagagagacactacaaccaaagaaaa |
242 |
Q |
| |
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| ||||| || ||||| | ||||||||| |
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| T |
30698502 |
taaaagaaaggcactatgaacaaagaaaa |
30698474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 21 - 229
Target Start/End: Complemental strand, 30656753 - 30656545
Alignment:
| Q |
21 |
acaacaagaggaggaagaagggtttggctaggaacatttaatagtgctgaagatgctgctttagcttatgatcaagctgcatttttaatgagaggttata |
120 |
Q |
| |
|
|||||||| || || | |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
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|
| T |
30656753 |
acaacaaggggtggcaaaagggtttggttaggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgcattttcaatgagaggtaata |
30656654 |
T |
|
| Q |
121 |
atgctttcctcaatttttctttcgaaagcgtcaaagaatctttgcgagagattcaatatgattgcagaaaagggtcttcacctgcacttgcactcaaaga |
220 |
Q |
| |
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||||| | |||||||||||| | |||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
30656653 |
atgctgtgctcaatttttctgttcaaagggtcaaagaatctttgcaagagattcaatatgattgcagaaaaggatcttcacctgcacttgcactaaaaga |
30656554 |
T |
|
| Q |
221 |
gagacacta |
229 |
Q |
| |
|
||| ||||| |
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| T |
30656553 |
gaggcacta |
30656545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 15 - 228
Target Start/End: Complemental strand, 30671920 - 30671707
Alignment:
| Q |
15 |
agagatacaacaagaggaggaagaagggtttggctaggaacatttaatagtgctgaagatgctgctttagcttatgatcaagctgcatttttaatgagag |
114 |
Q |
| |
|
||||| |||||||| || || | |||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
30671920 |
agagacacaacaaggggtggtaaaagggtttggcttggaacatttgacagtgctgaagatgctgctttagcttatgatcaagctgcattttcaatgagag |
30671821 |
T |
|
| Q |
115 |
gttataatgctttcctcaatttttctttcgaaagcgtcaaagaatctttgcgagagattcaatatgattgcagaaaagggtcttcacctgcacttgcact |
214 |
Q |
| |
|
|| ||||||| | |||||||||||| | |||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
30671820 |
gtaataatgccgtgctcaatttttctgttcaaagggtcaaagaatctttgcaagagattcaatatgattgcagagaagggtcttcacctgcacttgcact |
30671721 |
T |
|
| Q |
215 |
caaagagagacact |
228 |
Q |
| |
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||| |||||||||| |
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|
| T |
30671720 |
caaggagagacact |
30671707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 117
Target Start/End: Complemental strand, 16252144 - 16252065
Alignment:
| Q |
38 |
aagggtttggctaggaacatttaatagtgctgaagatgctgctttagcttatgatcaagctgcatttttaatgagaggtt |
117 |
Q |
| |
|
|||||| ||| ||||||||||| |||||||||||| || || ||||||||||||||||||| |||| ||||||||||| |
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|
| T |
16252144 |
aagggtatggttaggaacatttgatagtgctgaagcagcagcactagcttatgatcaagctgctttttcaatgagaggtt |
16252065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 39 - 117
Target Start/End: Original strand, 33042601 - 33042679
Alignment:
| Q |
39 |
agggtttggctaggaacatttaatagtgctgaagatgctgctttagcttatgatcaagctgcatttttaatgagaggtt |
117 |
Q |
| |
|
||||| ||||||||||| ||| ||||||| |||| ||||||||| |||||||||||||| || |||| |||||||||| |
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|
| T |
33042601 |
agggtgtggctaggaacctttgatagtgcagaagctgctgctttggcttatgatcaagcagctttttccatgagaggtt |
33042679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 15815181 - 15815216
Alignment:
| Q |
14 |
cagagatacaacaagaggaggaagaagggtttggct |
49 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |
|
|
| T |
15815181 |
cagagatacagcaagaggaggaagaagggtttggct |
15815216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 21 - 201
Target Start/End: Original strand, 56539165 - 56539345
Alignment:
| Q |
21 |
acaacaagaggaggaagaagggtttggctaggaacatttaatagtgctgaagatgctgctttagcttatgatcaagctgcatttttaatgagaggttata |
120 |
Q |
| |
|
||||||||| ||||||||| |||||||| ||||||||| | |||||||| ||||||||||||||||| |||||||||||||||| | |||||||| ||| |
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| T |
56539165 |
acaacaagaaaaggaagaagtgtttggcttggaacatttgacagtgctgaggatgctgctttagcttacgatcaagctgcattttcattgagaggtaata |
56539264 |
T |
|
| Q |
121 |
atgctttcctcaatttttctttcgaaagcgtcaaagaatctttgcgagagattcaatatgattgcagaaaagggtcttcac |
201 |
Q |
| |
|
||| | | |||||||||||| | |||| ||||||| || ||||| |||||||||||||||||||||| ||| || ||||| |
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| T |
56539265 |
atgttgtgctcaatttttctgttcaaagggtcaaaggatatttgcaagagattcaatatgattgcagagaagagttttcac |
56539345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 38337630 - 38337674
Alignment:
| Q |
49 |
taggaacatttaatagtgctgaagatgctgctttagcttatgatc |
93 |
Q |
| |
|
||||||||||| ||| ||| ||||||||||||||||| ||||||| |
|
|
| T |
38337630 |
taggaacatttgatactgcagaagatgctgctttagcctatgatc |
38337674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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