View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12891_low_47 (Length: 338)
Name: NF12891_low_47
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_low_47 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 16 - 338
Target Start/End: Original strand, 43350430 - 43350752
Alignment:
| Q |
16 |
agctgatcaaatggtatatgcttactgacttgtatgtttttcacaaaactatatgtttattccatatatttgatgctaattccttcaatttctctctctt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43350430 |
agctgatcaaatggtatatgcttactgacttgtatgtttttcacaaaactatatgtttattccatatatttgatgctaattccttcaatttctctctctt |
43350529 |
T |
|
| Q |
116 |
tttgtgcagattactagaatagaatatgtgcattccaaaggatatttgcatagggatattaaacccgataacttcctcatgggacttggtcggaaagcca |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43350530 |
tttgtgcagattactagaatagaatatgtgcattccaaaggatatttgcatagggatattaaacccgataacttcctcatgggacttggtcggaaagcca |
43350629 |
T |
|
| Q |
216 |
accaggtaactatcttgttattgctagcagttgaacttgcccgtcaatcaactatttattatggtctcacttgtgtgtgtaattgtgttgtttttgtcac |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
43350630 |
accaggtaactatcttgttattgctagcagttgaacttgcccgtcaatcaactatttattatggtctcacttgtgtgtgtaattatgttgtttttgtcgc |
43350729 |
T |
|
| Q |
316 |
aacaacaacaaccaagccttatc |
338 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
43350730 |
aacaacaacaaccaagccttatc |
43350752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 119 - 210
Target Start/End: Original strand, 33474812 - 33474903
Alignment:
| Q |
119 |
gtgcagattactagaatagaatatgtgcattccaaaggatatttgcatagggatattaaacccgataacttcctcatgggacttggtcggaa |
210 |
Q |
| |
|
|||||||| || |||||||| ||||||||||| ||||| | | ||||||||||| ||||| |||||||| |||||||||||||||||||| |
|
|
| T |
33474812 |
gtgcagatgaccagaatagagtatgtgcattctaaagggttcctccatagggatataaaaccggataactttctcatgggacttggtcggaa |
33474903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University