View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_low_48 (Length: 338)
Name: NF12891_low_48
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 56312639 - 56312326
Alignment:
| Q |
1 |
atgttggggtaatctatactcattcataatccaactggttcggatgcctttaggagcttttccagaatagaaaactagggttttcttgagtccaattgaa |
100 |
Q |
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| T |
56312639 |
atgttggggtaatctatactcattcataatccaactggttcggatgcctttaggagcttttccagaatagaaaactagggttttcttgagtccaattgaa |
56312540 |
T |
|
| Q |
101 |
cggaagttttcagttcgaatcatcctatctgctcctgttgccttccaataaccagaagttgttacacgatttggacgatcaccgtttcgatacttcctat |
200 |
Q |
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| T |
56312539 |
cggaagttttcagttcgaatcatcctatccgctcctgttgccttccaataaccagaagttgttacacgatttggacgatcaccgtttcgatacttcctat |
56312440 |
T |
|
| Q |
201 |
ctcgaggcacataaaagtaccactccttctctccgattgctgccaaagctgctcatcatcatcatatgcaattcatatatatcaaattcaatcacataac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||| |
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| T |
56312439 |
ctcgaggcacataaaagtaccactccttctctccgattgctgccaaagctgctcatcatcatcat---ca--tcat-catatcaaattcaatcacataac |
56312346 |
T |
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| Q |
301 |
taaatatataacagcttcat |
320 |
Q |
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|||||||||||||||||||| |
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| T |
56312345 |
taaatatataacagcttcat |
56312326 |
T |
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