View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_low_49 (Length: 336)
Name: NF12891_low_49
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_low_49 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 5 - 336
Target Start/End: Original strand, 5684579 - 5684910
Alignment:
| Q |
5 |
gagaagcaaagggtgtaattttaagttgttaagtagtaatgaaccaaattgtgctatagcctcaacttctacttcatcttcactaagcctaaagaaaaag |
104 |
Q |
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| T |
5684579 |
gagaatcaaagggtgtaattttaagttgttaagtagtaatgaaccaaattgtgctatagcctcaacttctacttcatcttcactaagcctaaagaaaaag |
5684678 |
T |
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| Q |
105 |
ttgcaacaagaacacattttttcagctgggattttctcattcaagcctatnnnnnnnccaaaattttgtgacaaaaaacatagtattcataaccttaaga |
204 |
Q |
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| T |
5684679 |
ttgcaacaagaacacattttttcagctgggattttctcattcaagcctataaaaaaaccaaaattttgtgacaaaaaacatagtattcataaccttaaga |
5684778 |
T |
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| Q |
205 |
aacaacatagatatgtgaaaaatttggaacaatcaaaaatttcaagcaaaaataaagtacctaatgaagttgaagatttcttcttttttcctccaaaccc |
304 |
Q |
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|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5684779 |
aacaacatagttatgtgaaaaatttggaacaatcaaaattttcaagcaaaaataaagtacctaatgaagttgaagatttcttcttttttcctccaaaccc |
5684878 |
T |
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| Q |
305 |
nnnnnnnccaccacctattatccctaatccac |
336 |
Q |
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| T |
5684879 |
tttttttccaccacctattatccctaatccac |
5684910 |
T |
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