View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_low_5 (Length: 592)
Name: NF12891_low_5
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 222 - 581
Target Start/End: Original strand, 40451171 - 40451528
Alignment:
| Q |
222 |
tgtagaatgtaaccaaattttcaattctaaaaaggattttaagacaccttggtatactatcaagtggcttggtaagtgctagtactgaattcataagcca |
321 |
Q |
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| T |
40451171 |
tgtagaatgtaaccaaattttcaattctaaaaaggattttaggacaccttggtatactatcaagtggcttggtaagtgctagtactgaattcataagcca |
40451270 |
T |
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| Q |
322 |
tgcccaacaagcatgcagagtcacagtgcatagccaaattcacagtgttttgtgccagcaatatttttatcctttcacttcaagccagcgcttcaaacgg |
421 |
Q |
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| T |
40451271 |
tgcccaacaagcatgcagagtcacagtgcatagccaaattca--gtgttttgtgccagcaatatttttatcctttcacttcaagccagcgcttcaaacgg |
40451368 |
T |
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| Q |
422 |
aaattcatgtcgctggaatttcacttcaatccaagacaagacatgtctgcacccgtatgcatatgttgcacgcaaaaataagaaatcattactatatagt |
521 |
Q |
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| T |
40451369 |
aaattcatgtcgctggaatttcacgtcaatccaagacaagacatgtctgcacccgtatgcatatgttgcactcaaaaataagaaatcattactatatagt |
40451468 |
T |
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| Q |
522 |
gttctgaaatatttgacagcaggaataattacaaacatttcacaaatagtcaccagtgaa |
581 |
Q |
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| T |
40451469 |
gttctgaaatatttgacagcagtaataattacaaacatttcacaaatagtcacccgtgaa |
40451528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 40451040 - 40451171
Alignment:
| Q |
16 |
ttaatttccaatggataagggatatgtcatttggagttcaagatgaaaactaaataaagttggattaacaaaag-ttgatatatctgatttaaaatttga |
114 |
Q |
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| T |
40451040 |
ttaatttccaatggataagggatatgtcatttggagtttaagatgaaaactaaataaagttggatcaacaaaagtttgatatatttgatttaaaatttgt |
40451139 |
T |
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| Q |
115 |
atcggacacatcaactttaataactcaactgt |
146 |
Q |
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| T |
40451140 |
atcggacacatcaactttaataactcaactgt |
40451171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 148
Target Start/End: Original strand, 48729577 - 48729644
Alignment:
| Q |
82 |
aacaaaagttgatatatctgatttaaaatttgaatcggacacatcaac-tttaataactcaactgtct |
148 |
Q |
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| T |
48729577 |
aacaaaagttgatatatctaattcaaaattttaatcagatacatcaacttttattaactcaaatgtct |
48729644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 82 - 132
Target Start/End: Complemental strand, 21537961 - 21537911
Alignment:
| Q |
82 |
aacaaaagttgatatatctgatttaaaatttgaatcggacacatcaacttt |
132 |
Q |
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| T |
21537961 |
aacaaaagttgatgtatctgaactaaaatttgaatcagatacatcaacttt |
21537911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 26026888 - 26026856
Alignment:
| Q |
71 |
aaagttggattaacaaaagttgatatatctgat |
103 |
Q |
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| T |
26026888 |
aaagttgggttaacaaaagttgatatatctgat |
26026856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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