View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12891_low_52 (Length: 311)

Name: NF12891_low_52
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12891_low_52
NF12891_low_52
[»] chr7 (3 HSPs)
chr7 (17-310)||(47457607-47457900)
chr7 (277-310)||(3562023-3562056)
chr7 (278-310)||(36548605-36548637)
[»] chr8 (2 HSPs)
chr8 (277-310)||(39703453-39703486)
chr8 (277-310)||(39701948-39701981)
[»] chr6 (2 HSPs)
chr6 (273-310)||(2086999-2087036)
chr6 (274-310)||(1814927-1814963)
[»] chr1 (2 HSPs)
chr1 (277-310)||(32716308-32716341)
chr1 (274-310)||(44918021-44918057)
[»] scaffold0727 (1 HSPs)
scaffold0727 (278-310)||(5691-5723)
[»] chr4 (3 HSPs)
chr4 (274-310)||(9759287-9759323)
chr4 (279-311)||(9971709-9971741)
chr4 (278-310)||(23553570-23553602)
[»] chr2 (1 HSPs)
chr2 (278-310)||(12919497-12919529)


Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 17 - 310
Target Start/End: Complemental strand, 47457900 - 47457607
Alignment:
Q  17 cacagatataaccaaaacatagacaacaaaatttgagcacaattgtgatctgtatatattaaagatcatcaatgcttcaacaaatgttctcaaacatttc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47457900 cacagatataaccaaaacatagacaacaaaatttgagcacaattgtgatctgtatatattaaagatcatcaatgcttcaacaaatgttctcaaacatttc 47457801  T
Q  117 accctctatgtgtaaaaggtgtaaaagctttctgagagcagaatcaacaaatcatgctatcttgctatcatcccaatatatatgcacggcaaatagcatc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47457800 accctctatgtgtaaaaggtgtaaaagctttctgagagcagaatcaacaaatcatgctatcttgctatcatcccaatatatatgcacggcaaatagcatc 47457701  T
Q  217 atctatgtttcatcaaatgtcgtaaaacataccagttaccatctctataaaaattgtaaagatttgtctaacgtgtgcaatattgcacatgtta 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  47457700 atctatgtttcatcaaatgtcgtaaaacataccagttaccatctctataaaaattgtaaggatttgtctaacatgtgcaatattgcacatgtta 47457607  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 310
Target Start/End: Complemental strand, 3562056 - 3562023
Alignment:
Q  277 gatttgtctaacgtgtgcaatattgcacatgtta 310  Q
    |||||||||||| |||||||||||||||||||||    
T  3562056 gatttgtctaacatgtgcaatattgcacatgtta 3562023  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 310
Target Start/End: Complemental strand, 36548637 - 36548605
Alignment:
Q  278 atttgtctaacgtgtgcaatattgcacatgtta 310  Q
    ||||||||||| |||||||||||||||||||||    
T  36548637 atttgtctaacatgtgcaatattgcacatgtta 36548605  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 277 - 310
Target Start/End: Original strand, 39703453 - 39703486
Alignment:
Q  277 gatttgtctaacgtgtgcaatattgcacatgtta 310  Q
    ||||||||||||||||||||||||||||||||||    
T  39703453 gatttgtctaacgtgtgcaatattgcacatgtta 39703486  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 310
Target Start/End: Complemental strand, 39701981 - 39701948
Alignment:
Q  277 gatttgtctaacgtgtgcaatattgcacatgtta 310  Q
    |||||||||||| |||||||||||||||||||||    
T  39701981 gatttgtctaacatgtgcaatattgcacatgtta 39701948  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 310
Target Start/End: Complemental strand, 2087036 - 2086999
Alignment:
Q  273 taaagatttgtctaacgtgtgcaatattgcacatgtta 310  Q
    ||||| |||||||||| |||||||||||||||||||||    
T  2087036 taaaggtttgtctaacatgtgcaatattgcacatgtta 2086999  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 310
Target Start/End: Complemental strand, 1814963 - 1814927
Alignment:
Q  274 aaagatttgtctaacgtgtgcaatattgcacatgtta 310  Q
    |||| |||||||||| |||||||||||||||||||||    
T  1814963 aaaggtttgtctaacatgtgcaatattgcacatgtta 1814927  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 310
Target Start/End: Complemental strand, 32716341 - 32716308
Alignment:
Q  277 gatttgtctaacgtgtgcaatattgcacatgtta 310  Q
    |||||||||||| |||||||||||||||||||||    
T  32716341 gatttgtctaacatgtgcaatattgcacatgtta 32716308  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 310
Target Start/End: Original strand, 44918021 - 44918057
Alignment:
Q  274 aaagatttgtctaacgtgtgcaatattgcacatgtta 310  Q
    |||| |||||||||| |||||||||||||||||||||    
T  44918021 aaaggtttgtctaacatgtgcaatattgcacatgtta 44918057  T

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Target: scaffold0727 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0727
Description:

Target: scaffold0727; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 310
Target Start/End: Original strand, 5691 - 5723
Alignment:
Q  278 atttgtctaacgtgtgcaatattgcacatgtta 310  Q
    ||||||||||| |||||||||||||||||||||    
T  5691 atttgtctaacatgtgcaatattgcacatgtta 5723  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 310
Target Start/End: Complemental strand, 9759323 - 9759287
Alignment:
Q  274 aaagatttgtctaacgtgtgcaatattgcacatgtta 310  Q
    |||| |||||||||| |||||||||||||||||||||    
T  9759323 aaaggtttgtctaacatgtgcaatattgcacatgtta 9759287  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 311
Target Start/End: Complemental strand, 9971741 - 9971709
Alignment:
Q  279 tttgtctaacgtgtgcaatattgcacatgttac 311  Q
    |||||||||| ||||||||||||||||||||||    
T  9971741 tttgtctaacatgtgcaatattgcacatgttac 9971709  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 310
Target Start/End: Original strand, 23553570 - 23553602
Alignment:
Q  278 atttgtctaacgtgtgcaatattgcacatgtta 310  Q
    ||||||||||| |||||||||||||||||||||    
T  23553570 atttgtctaacatgtgcaatattgcacatgtta 23553602  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 310
Target Start/End: Complemental strand, 12919529 - 12919497
Alignment:
Q  278 atttgtctaacgtgtgcaatattgcacatgtta 310  Q
    ||||||||||| |||||||||||||||||||||    
T  12919529 atttgtctaacatgtgcaatattgcacatgtta 12919497  T

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