View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_low_53 (Length: 301)
Name: NF12891_low_53
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_low_53 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 20 - 291
Target Start/End: Original strand, 47927930 - 47928201
Alignment:
| Q |
20 |
catcaaacacattatatattatatagttaatcaatatctgatttcaagcacataaaggagggtttcttccagctccaccaaagtagaatacaggatcttt |
119 |
Q |
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| T |
47927930 |
catcaaacacattatatattatatagttaatcaatatctgatttcaagcacataaaggagggtttcttccagctcctccaaagtagaatacaggatcttt |
47928029 |
T |
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| Q |
120 |
tccatatggagcatcattgagggcactgtaacaatatggttctgcagcatgtgtacttacaaatgatggatacttaagagcttgtgaataatctttaatt |
219 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47928030 |
tccatatggagcgtcattgagggcactgtaacaatatggttctgcagcatgtgtacttacaaatgatggatacttaagagcttgtgaataatctttaatt |
47928129 |
T |
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| Q |
220 |
ctcacactacccatgtaacatgcggccccaaatcgaccacttgctgcctctccactacccatctgtgctcct |
291 |
Q |
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| T |
47928130 |
ctcacactacccatgtaacatgcggccccaaatcgaccacttgctgcatctccactacccatctgtgttcct |
47928201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 87 - 252
Target Start/End: Original strand, 47918235 - 47918400
Alignment:
| Q |
87 |
tccagctccaccaaagtagaatacaggatcttttccatatggagcatcattgagggcactgtaacaatatggttctgcagcatgtgtacttacaaatgat |
186 |
Q |
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| T |
47918235 |
tccagcacctccaaaatagaatacaggatcttttccatatggagcatcattgaaggcactgtaacaatatggttctatagcatgtgtacttacaaatgat |
47918334 |
T |
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| Q |
187 |
ggatacttaagagcttgtgaataatctttaattctcacactacccatgtaacatgcggccccaaat |
252 |
Q |
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| T |
47918335 |
gggtacttaagtgcttgcgaattatctttgattctcacaccacccatgtaacatgcaaccccaaat |
47918400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 97 - 291
Target Start/End: Original strand, 47935441 - 47935635
Alignment:
| Q |
97 |
ccaaagtagaatacaggatcttttccatatggagcatcattgagggcactgtaacaatatggttctgcagcatgtgtacttacaaatgatggatacttaa |
196 |
Q |
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||||| || ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||| ||| |||||| || | |
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| T |
47935441 |
ccaaaataaaatacaggatcttgtccatatggagcttcattgagggcactgtaacaatatggttctgcagcataagtagttacatatgctggatatttga |
47935540 |
T |
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| Q |
197 |
gagcttgtgaataatctttaattctcacactacccatgtaacatgcggccccaaatcgaccacttgctgcctctccactacccatctgtgctcct |
291 |
Q |
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| T |
47935541 |
gagcttttgaataatccttaattctaacattgcttatgtaacatgcgaacccaaatcgaccacttgcttcttctccactacccatctgtgttcct |
47935635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 104 - 291
Target Start/End: Original strand, 47946590 - 47946777
Alignment:
| Q |
104 |
agaatacaggatcttttccatatggagcatcattgagggcactgtaacaatatggttctgcagcatgtgtacttacaaatgatggatacttaagagcttg |
203 |
Q |
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|||| |||||||||||||||||| || |||| ||||||||||||||||| || |||||||| |||| ||||||||||||| ||||||||| |||| || |
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| T |
47946590 |
agaagacaggatcttttccatattgaacatcgttgagggcactgtaacagtaaggttctgctgcatatgtacttacaaattgtggatacttgagagtttc |
47946689 |
T |
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| Q |
204 |
tgaataatctttaattctcacactacccatgtaacatgcggccccaaatcgaccacttgctgcctctccactacccatctgtgctcct |
291 |
Q |
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| T |
47946690 |
tgaataatccttaattctcacatttgtcatgtaacatgcgaacccaaatcgaccacttgctgcttctccactacccatttgtgttcct |
47946777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 97 - 224
Target Start/End: Original strand, 47909079 - 47909206
Alignment:
| Q |
97 |
ccaaagtagaatacaggatcttttccatatggagcatcattgagggcactgtaacaatatggttctgcagcatgtgtacttacaaatgatggatacttaa |
196 |
Q |
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|||||| |||| ||||| |||||||||||||||||| ||| |||||||||||||| | || ||| |||||||||| |||| ||| ||| ||||||| |
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| T |
47909079 |
ccaaagaagaacacagggtcttttccatatggagcaatatttagggcactgtaacactcaggctctccagcatgtgtggttacgaattgtgggtacttaa |
47909178 |
T |
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| Q |
197 |
gagcttgtgaataatctttaattctcac |
224 |
Q |
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|||||||||| ||||||||||||||||| |
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| T |
47909179 |
gagcttgtgagtaatctttaattctcac |
47909206 |
T |
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