View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12891_low_6 (Length: 574)
Name: NF12891_low_6
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 516; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 18 - 565
Target Start/End: Original strand, 37957713 - 37958260
Alignment:
| Q |
18 |
actcctactagttttatacatgcattatcttgaaatatactatttattgcttctccccaatggcagagcataagcttgttgagatttcagaaatggcaga |
117 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
37957713 |
actccgactagttttatacatgcattatcttgaaatatactatttattgcttctccccaatggcggagcataagcttgttgagatttcagaaatggcaga |
37957812 |
T |
|
| Q |
118 |
gcaacagcttattgagcaagctcttgtttctccatcaacaccaagaacaacaacaacttctcttcctctcacattccttgacttgccttttgcaggtcca |
217 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37957813 |
gcaaaagcttattgagcaagctcttgtttctccatcaacaccaagaacaacaacaacttctcttcctctcacattccttgacttgccttttgcaggtcca |
37957912 |
T |
|
| Q |
218 |
gtctatgttgaacgcttattcttctatcactttcaacattcaacaacccatttttgtaaaacaacacttccatctctcaaacactctctttctcttactc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37957913 |
gtctatgttgaacgcttattcttctatcactttccacattcaacaacccatttttgtaaaacaacacttccatctctcaaacactctctttctcttactc |
37958012 |
T |
|
| Q |
318 |
ttcaacatttcttccctctggctggaaatcttcaatgtcctccacaaccccacaaaccttttattctttgcactcaaaatgactctgtcgcttttaccat |
417 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37958013 |
ttcaacatttcttccctctagctggaaatcttcaatgtcctccacaaccccacaaaccttttattctttgcactcaaaatgactctgtcgcttttaccat |
37958112 |
T |
|
| Q |
418 |
cgtcgaatcctcggcagatttcaaccatctatcaaccaaccaccaccccaaaaatcttaaagactataattatcttagtccaaaattaagccacaaaaca |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
37958113 |
cgtcgaatcctcggcagatttcaaccatctatcaaccaatcaccaccccaaaaatcttaaagactataattatcttagtccaaaattaagccgcaaaaca |
37958212 |
T |
|
| Q |
518 |
acctatgatgataatgacattgagaataacacattcattttccctttg |
565 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37958213 |
acctatgatggtaatgacattgagaataacacattcattttccctttg |
37958260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 96 - 487
Target Start/End: Original strand, 37952056 - 37952447
Alignment:
| Q |
96 |
ttgagatttcagaaatggcagagcaacagcttattgagcaagctcttgtttctccatcaacaccaagaacaacaacaacttctcttcctctcacattcct |
195 |
Q |
| |
|
||||||||||| |||||||| | || |||||||||||||| || |||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
37952056 |
ttgagatttcacaaatggcaaatcataagcttattgagcaaactgttgtttttccatcaacaccaagaacaacaacaacttttcttcctctcacattcct |
37952155 |
T |
|
| Q |
196 |
tgacttgccttttgcaggtccagtctatgttgaacgcttattcttctatcactttcaacattcaacaacccatttttgtaaaacaacacttccatctctc |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37952156 |
cgacttgccttttgcaggtccagtctatgttgaacgcttattcttctatcactttcctcattcaacaacccatttttctaaaacaacacttccatctctc |
37952255 |
T |
|
| Q |
296 |
aaacactctctttctcttactcttcaacatttcttccctctggctggaaatcttcaatgtcctccacaaccccacaaaccttttattctttgcactcaaa |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
37952256 |
aaacactctctttctcttactcttcaacatttcttccctcttgctggaaatcttcactgtcctctaccaccccacaaaccttttattctttgcactcaaa |
37952355 |
T |
|
| Q |
396 |
atgactctgtcgcttttaccatcgtcgaatcctcggcagatttcaaccatctatcaaccaaccaccaccccaaaaatcttaaagactataat |
487 |
Q |
| |
|
||||||| ||| |||||||| || ||||||| || ||| ||||||||||||| ||||||||||| |||||||||||||| |||||| |||| |
|
|
| T |
37952356 |
atgactccgtcacttttaccgtcatcgaatcttcagcaaatttcaaccatctctcaaccaaccaacaccccaaaaatctccaagactttaat |
37952447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 168 - 565
Target Start/End: Complemental strand, 37897327 - 37896930
Alignment:
| Q |
168 |
caacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtctatgttgaacgcttattcttctatcactttcaacattcaacaaccca |
267 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| || |||||| |||||||| |||| ||||||||||||||||| ||||||||||| || |
|
|
| T |
37897327 |
caacaatttctcttcctctcacattccttgacttgcctttagctggtccaatctatgttagacgccaattcttctatcactttcctcattcaacaactca |
37897228 |
T |
|
| Q |
268 |
tttttgtaaaacaacacttccatctctcaaacactctctttctcttactcttcaacatttcttccctctggctggaaatcttcaatgtcctccacaaccc |
367 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||| |||| |||| |
|
|
| T |
37897227 |
tttttgcaaaacaacacttccatctctcaaacactctctttctcttactcttcaacatttcttccctcttgctggaaatctaatctctccaccaccaccc |
37897128 |
T |
|
| Q |
368 |
cacaaaccttttattctttgcactcaaaatgactctgtcgcttttaccatcgtcgaatcctcggcagatttcaaccatctatcaaccaaccaccacccca |
467 |
Q |
| |
|
|||||||| ||||| || | ||||||||| || |||||| | |||||| || ||||| ||||||| ||||||||||||| ||| |||| ||||| |||| |
|
|
| T |
37897127 |
cacaaaccctttatcctctacactcaaaaagattctgtcacctttaccgtcatcgaaacctcggcgaatttcaaccatctttcagccaatcaccatccca |
37897028 |
T |
|
| Q |
468 |
aaaatcttaaagactataattatcttagtccaaaattaagccacaaaacaacctatgatgataatgacattgagaataacacattcattttccctttg |
565 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37897027 |
aaaatcttaaagactataatcatcttgttccaaagttaacacacaaaacaacctatgatgataatgacattgaaaataacacattcattttccctttg |
37896930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 165 - 348
Target Start/End: Complemental strand, 44905830 - 44905646
Alignment:
| Q |
165 |
caacaacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtctatgttgaacgcttattcttctatcactttcaacattcaacaac |
264 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||| || |||||| | ||||||||| ||| || || |||||||| | | ||| ||| ||| | |
|
|
| T |
44905830 |
caacaacaacttatcttcctctcacattttttgactagcattttgctgatccagtctacgttaaatgcatattcttcgacccttttgcttatttaaccaa |
44905731 |
T |
|
| Q |
265 |
ccatttttgtaaaacaacacttccatctctcaaacac-tctctttctcttactcttcaacatttcttccctctggctggaaatct |
348 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
44905730 |
ccatttttgcaaaacaacacttccatcgctcaaaaaaatctctttctcttactcttcaacatttcttccctcttgccggaaatct |
44905646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 165 - 348
Target Start/End: Complemental strand, 28166985 - 28166801
Alignment:
| Q |
165 |
caacaacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtctatgttgaacgcttattcttctatcactttcaacattcaacaac |
264 |
Q |
| |
|
|||||||||||| ||||||| ||||||| ||||||||| |||||| ||||||||||| || || | |||| ||| | | ||| ||||||| | |
|
|
| T |
28166985 |
caacaacaacttatcttcctttcacattttttgacttgcattttgctggtccagtctacattaaatgaatatttttcgacccttttgcttattcaaccaa |
28166886 |
T |
|
| Q |
265 |
ccatttttgtaaaacaacacttccatctctcaaacac-tctctttctcttactcttcaacatttcttccctctggctggaaatct |
348 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||| | | ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28166885 |
ccatttttgcaaaacaacacttccttctctcaaaaaaatttctttctcttactcttcaacatttcttccctcttgctggaaatct |
28166801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 139; Significance: 2e-72; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 166 - 456
Target Start/End: Complemental strand, 11528744 - 11528454
Alignment:
| Q |
166 |
aacaacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtctatgttgaacgcttattcttctatcactttcaacattcaacaacc |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||| ||||| |||||||||||| ||| ||||||| | | |
|
|
| T |
11528744 |
aacaacaacttctcttcctctcacattcctcgacttgcattttgcaggtccagtctacgttaaacgcctattcttctatccttttgcttattcaaccaac |
11528645 |
T |
|
| Q |
266 |
catttttgtaaaacaacacttccatctctcaaacactctctttctcttactcttcaacatttcttccctctggctggaaatcttcaatgtcctccacaac |
365 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||| | ||| |||| || |
|
|
| T |
11528644 |
catttttgcaaaacaacactaccatctctcaaaaaatctctttctcttactcttcaacatttcttccctcttgctggaaatctcatttctccaccaccac |
11528545 |
T |
|
| Q |
366 |
cccacaaaccttttattctttgcactcaaaatgactctgtcgcttttaccatcgtcgaatcctcggcagatttcaaccatctatcaaccaa |
456 |
Q |
| |
|
| || |||||||||||||| | ||| || | ||||||||||| ||||||||| |||||||||| ||||||||||||||||| || ||||| |
|
|
| T |
11528544 |
cacaaaaaccttttattctctacaccgaagaagactctgtcgcctttaccatcatcgaatcctcagcagatttcaaccatctctcgaccaa |
11528454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 125 - 480
Target Start/End: Complemental strand, 39713177 - 39712822
Alignment:
| Q |
125 |
cttattgagcaagctcttgtttctccatcaacaccaagaacaacaacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtctatg |
224 |
Q |
| |
|
|||||||||||| ||||||| | ||| ||||| || | ||||||| |||| ||||||||||||||| |||||||||| |||||| |||||| |||| | |
|
|
| T |
39713177 |
cttattgagcaaactcttgtgtttcctgcaacaagaacagcaacaactacttatcttcctctcacatttcttgacttgcattttgctggtccaatctacg |
39713078 |
T |
|
| Q |
225 |
ttgaacgcttattcttctatcactttcaacattcaacaacccatttttgtaaaacaacacttccatctctcaaacactctctttctcttactcttcaaca |
324 |
Q |
| |
|
| |||||||||||||||||| |||| ||||| || | ||||||||| |||||||||||||||||||||||||| |||||||| | |||||||||| |
|
|
| T |
39713077 |
ctaaacgcttattcttctatccttttcctcattctaccaaccatttttgcaaaacaacacttccatctctcaaacagtctctttcatgtgctcttcaaca |
39712978 |
T |
|
| Q |
325 |
tttcttccctctggctggaaatcttcaatgtcctccacaaccccacaaaccttttattctttgcactcaaaatgactctgtcgcttttaccatcgtcgaa |
424 |
Q |
| |
|
||| |||||||| ||||||||||| | ||| |||| ||| || ||||||||||||| ||||| || | ||||| ||| || |||||||| ||| |
|
|
| T |
39712977 |
ttttttccctcttgctggaaatctcatttctccaccaccaccacaaaaaccttttattcgctgcaccgaagaagactccgtcttcttcaccatcgttgaa |
39712878 |
T |
|
| Q |
425 |
tcctcggcagatttcaaccatctatcaaccaaccaccaccccaaaaatcttaaaga |
480 |
Q |
| |
|
|||||| |||||||||||||||| |||| ||| ||||||| |||||||| ||||| |
|
|
| T |
39712877 |
tcctcgtcagatttcaaccatctctcaaacaaacaccacctgaaaaatctcaaaga |
39712822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 255 - 348
Target Start/End: Original strand, 3149622 - 3149715
Alignment:
| Q |
255 |
attcaacaacccatttttgtaaaacaacacttccatctctcaaacactctctttctcttactcttcaacatttcttccctctggctggaaatct |
348 |
Q |
| |
|
||||||| | ||||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3149622 |
attcaaccagccatttttgcaaaacaacacttccatctctcgaaaaatctctttctcttactcttcaacatttcttccctcttgctggaaatct |
3149715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 24549622 - 24549682
Alignment:
| Q |
18 |
actcctactagttttatacatgcattatcttgaaatatactatttattgcttctccccaat |
78 |
Q |
| |
|
||||| |||| ||||||| || |||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
24549622 |
actccgactaattttataaatttattatcttgaaatatattatttattgtttctccccaat |
24549682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 5e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 125 - 348
Target Start/End: Complemental strand, 34539487 - 34539264
Alignment:
| Q |
125 |
cttattgagcaagctcttgtttctccatcaacaccaagaacaacaacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtctatg |
224 |
Q |
| |
|
|||||||||||| ||||||||| || | ||||| ||| |||||||||||||| ||||||||||| ||| ||||||||| |||||| |||||| |||| |
|
|
| T |
34539487 |
cttattgagcaaactcttgtttttcgagcaacaacaaaaacaacaacaacttatcttcctctcatattttttgacttgcattttgctggtccaatctaca |
34539388 |
T |
|
| Q |
225 |
ttgaacgcttattcttctatcactttcaacattcaacaacccatttttgtaaaacaacacttccatctctcaaacactctctttctcttactcttcaaca |
324 |
Q |
| |
|
|| || || |||||||| | | ||| ||||||| | ||||||| | |||||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
34539387 |
ttaaatgcatattcttcgacccttttgcttattcaaccaaccattttcgcaaaacaacacttccatctctcaaaaaatctctttctcttactcttcaaca |
34539288 |
T |
|
| Q |
325 |
tttcttccctctggctggaaatct |
348 |
Q |
| |
|
|||||||||||| || |||||||| |
|
|
| T |
34539287 |
tttcttccctcttgccggaaatct |
34539264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 165 - 348
Target Start/End: Original strand, 11148747 - 11148931
Alignment:
| Q |
165 |
caacaacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtctatgttgaacgcttattcttctatcactttcaacattcaacaac |
264 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||| ||||| ||||||||||| ||| || || |||||||| | | ||| ||||||| | |
|
|
| T |
11148747 |
caacaacaacttatcttcctctcacattttttgacttgcattttgttggtccagtctacgttaaatgcatattcttcgacccttttacttattcaaccaa |
11148846 |
T |
|
| Q |
265 |
ccatttttgtaaaacaacacttccatctctcaaacac-tctctttctcttactcttcaacatttcttccctctggctggaaatct |
348 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||| | ||||||||||| |
|
|
| T |
11148847 |
ccatttttgcaaaacaacacttccatctctcaaaaaaatctctttctcttactgttcaacatttcttcccttttgctggaaatct |
11148931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 125 - 348
Target Start/End: Complemental strand, 38758006 - 38757782
Alignment:
| Q |
125 |
cttattgagcaagctcttgtttctccatcaacaccaagaacaacaacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtctatg |
224 |
Q |
| |
|
|||||||||||||||||||||| | | ||||| ||| |||||||||||||| ||||||||| ||||| ||| ||||| ||||| ||||||||||| | |
|
|
| T |
38758006 |
cttattgagcaagctcttgttttttgagcaacaacaaaaacaacaacaacttatcttcctctaacattttttgccttgcattttgttggtccagtctacg |
38757907 |
T |
|
| Q |
225 |
ttgaacgcttattcttctatcactttcaacattcaacaacccatttttgtaaaacaacacttccatctctcaaacac-tctctttctcttactcttcaac |
323 |
Q |
| |
|
|| || || |||||||| | | ||| ||||||| | ||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
38757906 |
ttaaatgcatattcttcgacccttttgcttattcaaccaaccatttttgcaaaacaacacttccatctctcaaaaaaatctctttctcttactcttcaac |
38757807 |
T |
|
| Q |
324 |
atttcttccctctggctggaaatct |
348 |
Q |
| |
|
||||||||||||| || |||||||| |
|
|
| T |
38757806 |
atttcttccctcttgccggaaatct |
38757782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 125 - 221
Target Start/End: Original strand, 13223286 - 13223382
Alignment:
| Q |
125 |
cttattgagcaagctcttgtttctccatcaacaccaagaacaacaacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtct |
221 |
Q |
| |
|
|||||||||||| ||||||||| || | ||||| || |||||||||||||| ||||||||||| ||| || |||||| |||||| |||||||||| |
|
|
| T |
13223286 |
cttattgagcaaactcttgtttttcgagcaacaacacaaacaacaacaacttatcttcctctcaaatttttttacttgcattttgctggtccagtct |
13223382 |
T |
|
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