View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_low_60 (Length: 281)
Name: NF12891_low_60
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_low_60 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 160 - 281
Target Start/End: Complemental strand, 42761156 - 42761035
Alignment:
| Q |
160 |
agcatcaccaatctccccgcatttaccatacatatcaaccaaagtagtacccacaaacaaatcctgatccaaaccacacctaaacaccgacccatgaacc |
259 |
Q |
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| T |
42761156 |
agcatcaccaatctcaccgcatttaccatacatatcaaccaaagtagtacccacaaacaaatcctgatccaaaccacacctaaacaccgacccatgaacc |
42761057 |
T |
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| Q |
260 |
gattttcctaccaaaaccttac |
281 |
Q |
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| T |
42761056 |
gattttcctaccaaaaccttac |
42761035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 11 - 143
Target Start/End: Complemental strand, 42804985 - 42804853
Alignment:
| Q |
11 |
atgaaattaaaacctcaatccaaagtaacatagatgaaagcataacttaacttcaatgagaatggatcctctcatgttctttcatgttaaaattatatgc |
110 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
42804985 |
atgaaattaaaacctcaatccaaagtaacatagaagaaagcataacttaacttcaatgagaatagatcctctcatgttctttcatgttgaaattatatgc |
42804886 |
T |
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| Q |
111 |
gacagttagtgaaaaacggcaataaacttatat |
143 |
Q |
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| T |
42804885 |
gacagttagtgaaaaatggcaataaacttatat |
42804853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 11 - 143
Target Start/End: Complemental strand, 42762583 - 42762451
Alignment:
| Q |
11 |
atgaaattaaaacctcaatccaaagtaacatagatgaaagcataacttaacttcaatgagaatggatcctctcatgttctttcatgttaaaattatatgc |
110 |
Q |
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| T |
42762583 |
atgaaattaaaacttcaatccaaagtaacatagaagaaagcataaattcacttcaatgagaatggatcctctcatgctctttcatgttaaaattatatgt |
42762484 |
T |
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| Q |
111 |
gacagttagtgaaaaacggcaataaacttatat |
143 |
Q |
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| T |
42762483 |
gacagttagtgaaaaacggcaataaacttatat |
42762451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 160 - 281
Target Start/End: Complemental strand, 42803558 - 42803437
Alignment:
| Q |
160 |
agcatcaccaatctccccgcatttaccatacatatcaaccaaagtagtacccacaaacaaatcctgatccaaaccacacctaaacaccgacccatgaacc |
259 |
Q |
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|||||||| ||||| || ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42803558 |
agcatcactaatctgtccacatttaccatacatatcaatcaaagtagtacccataaacaaatcctgatccaaaccacacctaaacaccgacccgtgaacc |
42803459 |
T |
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| Q |
260 |
gattttcctaccaaaaccttac |
281 |
Q |
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|| ||||||||||||||||||| |
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| T |
42803458 |
gactttcctaccaaaaccttac |
42803437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 33048929 - 33048811
Alignment:
| Q |
11 |
atgaaattaaaacctcaatccaaagtaacatagatgaaagcataacttaacttcaatgagaatggatcctctcatgttctttcatgttaaaattatatgc |
110 |
Q |
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||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33048929 |
atgaaattaaaacctcaatcctaagtaacatagaagaaagcataacttaacttcaatgagaatggatcctctca----------tgttaaaattatatgc |
33048840 |
T |
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| Q |
111 |
gacagttagtgaaaaacggcaataaactt |
139 |
Q |
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| T |
33048839 |
gacagttagtgaaaaacggcaataaactt |
33048811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 179 - 277
Target Start/End: Original strand, 6170723 - 6170821
Alignment:
| Q |
179 |
catttaccatacatatcaaccaaagtagtacccacaaacaaatcctgatccaaaccacacctaaacaccgacccatgaaccgattttcctaccaaaacc |
277 |
Q |
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|||||||||||||||| || |||| |||| |||||||||| ||||||||||||||||||| | || |||||| |||||||| ||||||| |||| |||| |
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| T |
6170723 |
catttaccatacatataaatcaaactagttcccacaaacacatcctgatccaaaccacacttcaaaaccgactcatgaaccaattttccaaccataacc |
6170821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 179 - 277
Target Start/End: Original strand, 6250085 - 6250183
Alignment:
| Q |
179 |
catttaccatacatatcaaccaaagtagtacccacaaacaaatcctgatccaaaccacacctaaacaccgacccatgaaccgattttcctaccaaaacc |
277 |
Q |
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|||||||||||||||| || |||| |||| |||||||||| ||||||||| ||||||||| | || |||||| |||||||| ||||||| |||| |||| |
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| T |
6250085 |
catttaccatacatataaatcaaactagttcccacaaacacatcctgatcgaaaccacacttcaaaaccgactcatgaaccaattttccaaccataacc |
6250183 |
T |
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