View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_low_62 (Length: 280)
Name: NF12891_low_62
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_low_62 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 43864957 - 43865212
Alignment:
| Q |
18 |
cttggtcagtccaaaacataacaatttagactctttaacaagcatctagccatgagtaatatt-atttgaaatgcattaacattttaacagataaaacca |
116 |
Q |
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| T |
43864957 |
cttggtcagtccaaaacataacaatttagactctttaacaagcatctagccatgagtaatatttatttgaaatgcattaacattttaacagataaaacca |
43865056 |
T |
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| Q |
117 |
aagatatcaattgagcagagtacatattgagaagtacacaacatactccttgcttcactcctcaatctgaacaggctcaaaacccctatgaattgaagac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43865057 |
aagatatcaattgagcagagtacatattgagaagtacacaacatactccttgcttcactcctcaatctgaacaggctcaaaacccctatgaattgaagac |
43865156 |
T |
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| Q |
217 |
ttaacagcattcaacacaagttgtgttttcctactaacaattggccacttcttctc |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43865157 |
ttaacagcattcaacacaagttgtgttttcctactaacaattggccacttcttctc |
43865212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 272
Target Start/End: Complemental strand, 13852713 - 13852611
Alignment:
| Q |
170 |
ttcactcctcaatctgaacaggctcaaaacccctatgaattgaagacttaacagcattcaacacaagttgtgttttcctactaacaattggccacttctt |
269 |
Q |
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|||| |||| |||||| ||||||||||||||| ||| ||| |||| ||| || || | ||| | ||||||||||||||||||| | ||||||| ||||| |
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| T |
13852713 |
ttcattcctgaatctgtacaggctcaaaacccttatcaatcgaagccttcacggcgtccaatatcagttgtgttttcctactaatagttggccatttctt |
13852614 |
T |
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| Q |
270 |
ctc |
272 |
Q |
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||| |
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| T |
13852613 |
ctc |
13852611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 253
Target Start/End: Complemental strand, 13856577 - 13856494
Alignment:
| Q |
170 |
ttcactcctcaatctgaacaggctcaaaacccctatgaattgaagacttaacagcattcaacacaagttgtgttttcctactaa |
253 |
Q |
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|||| |||| |||||| ||||||||||||||| ||| ||| |||| ||| || |||| ||| | ||||||||||||||||||| |
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| T |
13856577 |
ttcattcctgaatctgtacaggctcaaaacccttatcaatcgaagccttcacggcatccaatatcagttgtgttttcctactaa |
13856494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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