View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12891_low_63 (Length: 278)
Name: NF12891_low_63
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_low_63 |
 | |
|
| [»] scaffold2006 (1 HSPs) |
| | |
|
| [»] scaffold0060 (1 HSPs) |
| | |
|
| [»] scaffold0627 (1 HSPs) |
| | |
|
| [»] scaffold0070 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 19216375 - 19216635
Alignment:
| Q |
1 |
acctttggtgtgccttggtgagatttctcacaagtgtccaaagttatgaccagctaggatgtgtctttgggtagtgaaaggcagaaagccttgttcttag |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19216375 |
acctttggtgcgccttggtgagatttctcacaagtgtccaaagttatgaccagttaggatgtgtctttgggtagtgaaaggcggaaagccttgttcttag |
19216474 |
T |
|
| Q |
101 |
aaattttatattctgatgtaaaacaactctgatttaccatcctgaaaattcaagagaaacttatttattcatttctttgaagtcaatgagttttcagtta |
200 |
Q |
| |
|
|| ||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
19216475 |
aa-ttttatattttgatgtaaaacaactctgatttactattctgaaaattcaagagaaacttatttattcaattttttgaagtcaatgagttttcagtta |
19216573 |
T |
|
| Q |
201 |
cttttattatta-tttnnnnnnnnnntgttcatctttttcactaagaatttcataagttaat |
261 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
19216574 |
cttttattattattttttttaaaaaatgttcatctttttcactaagaatttcataagttaat |
19216635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 136
Target Start/End: Original strand, 19592023 - 19592135
Alignment:
| Q |
25 |
ttctcacaagtgtccaaagttatgaccagctaggatgtgtctttgggtagtgaaaggcagaa-agccttgttcttagaaattttatattctgatgtaaaa |
123 |
Q |
| |
|
|||||||||| || ||||||||||| || |||| ||||| |||| || ||||| | | || | |||| || |||| ||||||||||| ||||||||| |
|
|
| T |
19592023 |
ttctcacaagcatctaaagttatgacgagttagggtgtgttcttggataatgaaaaggataagatccttatttttaggaattttatatttcgatgtaaaa |
19592122 |
T |
|
| Q |
124 |
caactctgattta |
136 |
Q |
| |
|
||||||||||||| |
|
|
| T |
19592123 |
caactctgattta |
19592135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 183; Significance: 5e-99; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 37803205 - 37802945
Alignment:
| Q |
1 |
acctttggtgtgccttggtgagatttctcacaagtgtccaaagttatgaccagctaggatgtgtctttgggtagtgaaaggcagaaagccttgttcttag |
100 |
Q |
| |
|
||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
37803205 |
acctttgatgcgccttgttgagatttctcacaagtgtccaaagttatgaccagctaggatgtgtctttgggtagtgaaaggcggaaagccttgttgttag |
37803106 |
T |
|
| Q |
101 |
aaattttatattctgatgtaaaacaactctgatttaccatcctgaaaattcaagagaaacttatttattcatttctttgaagtcaatgagttttcagtta |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||| || |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
37803105 |
gaattttatattttgatgtaaaacaactctaatttactattctgaaaattcaagagaaacttatttattcaattttttgaagtcaatgagttttcagtta |
37803006 |
T |
|
| Q |
201 |
cttttattattatttnnnnnnnnnntgttcatctttttcactaagaatttcataagttaat |
261 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37803005 |
cttttattattattttaaaaaaaaatgttcatctttttcactaagaatttcataagttaat |
37802945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 37626665 - 37626403
Alignment:
| Q |
1 |
acctttggtgtgccttggtgagatttctcacaagtgtccaaagttatgaccagctaggatgtgtctttgggtagtgaaaggcagaaagccttgttcttag |
100 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||| |
|
|
| T |
37626665 |
acctttggtgcgccttgttgagatttctcacaagtgtccaaagttatgaccagctaggatgtgtctttaggtagtgaaaggcggaaagccttgttgttag |
37626566 |
T |
|
| Q |
101 |
aaattttatattctgatgtaaaacaactctgatttaccatcctgaaaattcaagagaaacttatttattcatttctttgaagtcaatgagttttcagtta |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||| || |||||||||||||||||||||| || |
|
|
| T |
37626565 |
gaattttatattttgatgtaaaacaactctgatttactattctgaaaattcaagagaaacttatttattcaattttttgaagtcaatgagttttcaggta |
37626466 |
T |
|
| Q |
201 |
cttttattattattt--nnnnnnnnnntgttcatctttttcactaagaatttcataagttaat |
261 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37626465 |
cttttattattatttaaaaaaaaaaaatgttcatctttttcactaagaatttcataagttaat |
37626403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 14275559 - 14275361
Alignment:
| Q |
1 |
acctttggtgtgccttggtgagatttctcacaagtgtccaaagttatgaccagctaggatgtgtctttgggtagtgaaaggcagaaagccttgttcttag |
100 |
Q |
| |
|
||||| |||| ||||| | |||| ||||| |||| |||||||||| |||||| ||||||||||| ||||||||| |||||| ||||||||||||||||| |
|
|
| T |
14275559 |
accttcggtgcgccttagcgagagttctcgcaagcgtccaaagttttgaccaactaggatgtgtacttgggtagtaaaaggctgaaagccttgttcttag |
14275460 |
T |
|
| Q |
101 |
aaattttatattctgatgtaaaacaactctgatttaccatcctgaaaattcaagagaaacttatttattcat-ttctttgaagtcaatgagttttcagtt |
199 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| || |||||||| ||||||||| | ||||||| | | ||||||| | |||||||||||||| |
|
|
| T |
14275459 |
gaattttatatt-tgatgtaaaacaactctgatttactattttgaaaatttaagagaaacctgtttattcgtgtattttgaagcctatgagttttcagtt |
14275361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2006 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: scaffold2006
Description:
Target: scaffold2006; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 1008 - 748
Alignment:
| Q |
1 |
acctttggtgtgccttggtgagatttctcacaagtgtccaaagttatgaccagctaggatgtgtctttgggtagtgaaaggcagaaagccttgttcttag |
100 |
Q |
| |
|
||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||| |
|
|
| T |
1008 |
acctttgttgcgccttgttgagatttctcacaagtgtccaaagttatgaccagctaggatgtgtcttttggtagtgaaaggcggaaagccttgttgttag |
909 |
T |
|
| Q |
101 |
aaattttatattctgatgtaaaacaactctgatttaccatcctgaaaattcaagagaaacttatttattcatttctttgaagtcaatgagttttcagtta |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||| || |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
908 |
gaattttatattttgatgtaaaacaactcttatttactattctgaaaattcaagagaaacttatttattcaattttttgaagtcaatgagttttcagtta |
809 |
T |
|
| Q |
201 |
cttttattattatttnnnnnnnnnntgttcatctttttcactaagaatttcataagttaat |
261 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
808 |
cttttattattattttaaaaaaaaatgttcatctttttcactaagaatttcataagttaat |
748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 19632178 - 19631917
Alignment:
| Q |
1 |
acctttggtgtgccttggtgagatttctcacaagtgtccaaagttatgaccagctaggatgtgtctttgggtagtgaaaggcagaaagccttgttcttag |
100 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19632178 |
acctttggtgcgccttggtgagatttttcacaagtgtccaaagttatgaccagctaggatgtgtctttgggtagtgaaaggcggaaagccttgttcttag |
19632079 |
T |
|
| Q |
101 |
aaattttatattctgatgtaaaacaactctgatttaccatcctgaaaattcaagagaaacttattta-ttcatttctttgaagtcaatgagttttcagtt |
199 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||| || ||||| |||||||||||||||||||| |||| | |||||||||||||||||||| ||| |
|
|
| T |
19632078 |
gaattttatattttgatgtaaaacaactctgatctactattctgaagattcaagagaaacttatttatttcaactttttgaagtcaatgagttttctgtt |
19631979 |
T |
|
| Q |
200 |
acttttattattatttnnnnnnnnnntgttcatctttttcactaagaatttcataagttaat |
261 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
19631978 |
acttttattattatttcttaaaaaaatgttcatatttttcactaagaatttcctaagttaat |
19631917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 2188728 - 2188942
Alignment:
| Q |
1 |
acctttggtgtgccttggtgagatttctcacaagtgtccaaagttatgaccagctaggatgtgtctttgggtagtgaaaggcagaaagccttgttcttag |
100 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
2188728 |
acctttgatgcgccttggtgagatttctcacaagtgttcaaagttatgaccagctaggaagtgtcgttgggtagtgaaaggcggaaagccttgttcttag |
2188827 |
T |
|
| Q |
101 |
aaattttatattctgatgtaaaacaactctgatttaccatcctgaaaattcaagagaaacttatttattcatttctttgaagtcaatgagttttcagtta |
200 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||| | || |||||||||||||||||||||||||||||| || ||| ||||||||||||||||| ||| |
|
|
| T |
2188828 |
gaattttatattttgatgtaaaacaactttgatttcctattctgaaaattcaagagaaacttatttattcaatttttttaagtcaatgagttttcaatta |
2188927 |
T |
|
| Q |
201 |
cttttattattattt |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
2188928 |
cttttattattattt |
2188942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 135
Target Start/End: Complemental strand, 1608070 - 1607955
Alignment:
| Q |
20 |
gagatttctcacaagtgtccaaagttatgaccagctaggatgtgtctttgggtagtgaaaggcagaaagccttgttcttagaaattttatattctgatgt |
119 |
Q |
| |
|
|||| ||||| |||| ||||||||||||||||||||||| |||||||||||||||| |||||| | ||||| ||||| |||| |||||| |||||| |
|
|
| T |
1608070 |
gagagttctcgcaagcgtccaaagttatgaccagctagggtgtgtctttgggtagttaaaggccaagggccttactcttaagaattatatattttgatgt |
1607971 |
T |
|
| Q |
120 |
aaaacaactctgattt |
135 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
1607970 |
aaaacaatactgattt |
1607955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 20536704 - 20536570
Alignment:
| Q |
1 |
acctttggtgtgccttggtgagatttctcacaagtgtccaaagttatgaccagctaggatgtgtctttgggtagtgaaaggcagaaagccttgttcttag |
100 |
Q |
| |
|
||||| |||| ||||| | |||| ||||| |||| ||||||||||||||||| ||||| |||||||||||||||| |||||| | ||||| ||||| |
|
|
| T |
20536704 |
accttgggtgcgccttagcgagagttctcgcaagcgtccaaagttatgaccaactagggtgtgtctttgggtagttaaaggccaagggccttactcttaa |
20536605 |
T |
|
| Q |
101 |
aaattttatattctgatgtaaaacaactctgattt |
135 |
Q |
| |
|
|||| |||||| |||||| |||||| ||||||| |
|
|
| T |
20536604 |
gaattgtatattttgatgttaaacaatactgattt |
20536570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 161; Significance: 6e-86; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 41313205 - 41312944
Alignment:
| Q |
1 |
acctttggtgtgccttggtgagatttctcacaagtgtccaaagttatgaccagctaggatgtgtctttgggtagtgaaaggcagaaagccttgttcttag |
100 |
Q |
| |
|
||||||| || |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
41313205 |
acctttgatgcgccttgttgagatttctcacaagtgtccaaagttatgaccaactaggatgtgtctttgggtagtgaaaggcggaaagccttgttcttag |
41313106 |
T |
|
| Q |
101 |
aaattttatattctgatgtaaaacaactctgatttaccatcctgaaaattcaagagaaacttatttattcatttctttgaagtcaatgagttttcagtta |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||| || |||||||||||| ||||||||||| |
|
|
| T |
41313105 |
gaattttatattttgatgtaaaacaactctgatttactattctgaaaattcaagagaaacttatttattcaattttttgaagtcaattagttttcagttg |
41313006 |
T |
|
| Q |
201 |
cttttattattat--ttnnnnnnnnnntgttcatctttttcactaagaatttcataagttaa |
260 |
Q |
| |
|
| |||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41313005 |
caattattattattattttttaaaatatgttcatctttttcactaagaatttcataagttaa |
41312944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 20448327 - 20448383
Alignment:
| Q |
26 |
tctcacaagtgtccaaagttatgaccagctaggatgtgtctttgggtagtgaaaggc |
82 |
Q |
| |
|
|||| |||| ||| ||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
20448327 |
tctcgcaagcgtctaaagttatgaccagctagggtgtgtctttgggtagttaaaggc |
20448383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 20534094 - 20534150
Alignment:
| Q |
26 |
tctcacaagtgtccaaagttatgaccagctaggatgtgtctttgggtagtgaaaggc |
82 |
Q |
| |
|
|||| |||| ||| ||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
20534094 |
tctcgcaagcgtctaaagttatgaccagctagggtgtgtctttgggtagttaaaggc |
20534150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 29823497 - 29823690
Alignment:
| Q |
1 |
acctttggtgtgccttggtgagatttctcacaagtgtccaaagttatgaccagctaggatgtgtctttgggtagtgaaaggcagaaagccttgttcttag |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
29823497 |
acctttggtgcgccttggtgagatttctcacaagtgtccaaagttatgaccagctagggtgtgtctttgggtagtgaaaggcggaaagctttgttcttag |
29823596 |
T |
|
| Q |
101 |
aaattttatattctgatgtaaaacaactctgatttaccatcctgaaaattcaagagaaacttatttattcatttctttgaagtcaatgagtttt |
194 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| || ||||| ||| |||||||||||||||||||| | | ||||||||||||||||| |
|
|
| T |
29823597 |
gaattttatattttgatgtaaaacaactctgatttactattctgaagatttaagagaaacttatttattcaaatttctgaagtcaatgagtttt |
29823690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 7093387 - 7093331
Alignment:
| Q |
26 |
tctcacaagtgtccaaagttatgaccagctaggatgtgtctttgggtagtgaaaggc |
82 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
7093387 |
tctcgcaagcgtccaaagttatgaccagctagggtgtgtctttgggtagttaaaggc |
7093331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 451558 - 451497
Alignment:
| Q |
20 |
gagatttctcacaagtgtccaaagttatgaccagctaggatgtgtctttgggtagtgaaagg |
81 |
Q |
| |
|
|||| ||||| |||| |||||||||||||||||| |||| |||||||||||||||| ||||| |
|
|
| T |
451558 |
gagagttctcgcaagcgtccaaagttatgaccagttagggtgtgtctttgggtagttaaagg |
451497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 7097108 - 7097072
Alignment:
| Q |
39 |
caaagttatgaccagctaggatgtgtctttgggtagt |
75 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7097108 |
caaagttatgaccagctagggtgtgtctttgggtagt |
7097072 |
T |
|
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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 261
Target Start/End: Original strand, 29840745 - 29840779
Alignment:
| Q |
227 |
gttcatctttttcactaagaatttcataagttaat |
261 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29840745 |
gttcatctttttcacgaagaatttcataagttaat |
29840779 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 9e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 7 - 199
Target Start/End: Complemental strand, 11991368 - 11991176
Alignment:
| Q |
7 |
ggtgtgccttggtgagatttctcacaagtgtccaaagttatgaccagctaggatgtgtctttgggtagtgaaaggcagaaagccttgttcttagaaattt |
106 |
Q |
| |
|
|||| ||||| | |||| ||||| |||| |||||||||| |||| ||||||||||||| ||||||||| ||||| ||||||||||||||||| ||||| |
|
|
| T |
11991368 |
ggtgcgccttagcgagagttctcgcaagcgtccaaagttttgactagctaggatgtgtacttgggtagtaaaaggtcgaaagccttgttcttaggaattt |
11991269 |
T |
|
| Q |
107 |
tatattctgatgtaaaacaactctgatttaccatcctgaaaattcaagagaaacttatttattcat-ttctttgaagtcaatgagttttcagtt |
199 |
Q |
| |
|
|||||| |||||||||||||||||||||||| || |||||||| ||||||||| | ||||||||| | ||||||| | |||||||||||||| |
|
|
| T |
11991268 |
tatatt-tgatgtaaaacaactctgatttactattttgaaaatttaagagaaacctgtttattcatgtattttgaagcctatgagttttcagtt |
11991176 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 639497 - 639633
Alignment:
| Q |
1 |
acctttggtgtgccttggtgagatttctcacaagtgtccaaagttatgaccagctaggatgtgtctttgggtagtgaaaggcagaaagccttgttcttag |
100 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||| ||||||| |||||||| | |||||||||| |||||||||||||| | |||||||||||| |||| |
|
|
| T |
639497 |
acctttggtgcgccttggtgagatttcacacaagcgtccaaatttatgaccggttaggatgtgtacttgggtagtgaaagtctgaaagccttgtttttag |
639596 |
T |
|
| Q |
101 |
aaattttatattctgatgtaaaacaactctgatttac |
137 |
Q |
| |
|
||||||||||| | ||||| || || ||||||||| |
|
|
| T |
639597 |
gaattttatattttaatgtagaataatactgatttac |
639633 |
T |
|
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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 8378437 - 8378493
Alignment:
| Q |
26 |
tctcacaagtgtccaaagttatgaccagctaggatgtgtctttgggtagtgaaaggc |
82 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8378437 |
tctcgcaagcgtccaaagttatgaccagctaggatgtgtctttgggtagttaaaggc |
8378493 |
T |
|
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Target: scaffold0060 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 17261 - 17386
Alignment:
| Q |
1 |
acctttggtgtgccttggtgagatttctcacaagtgtccaaagttatgaccagctaggatgtgtctttgggtagtgaaaggcagaaagccttgttcttag |
100 |
Q |
| |
|
||||| |||| ||||| | |||| ||||| |||| ||||||| |||||||||| |||| |||||||||||||||| |||||| | ||||| ||||| |
|
|
| T |
17261 |
accttgggtgcgccttagcgagagttctcgcaagcgtccaaaattatgaccagttagggtgtgtctttgggtagttaaaggccaagggccttactcttaa |
17360 |
T |
|
| Q |
101 |
aaattttatattctgatgtaaaacaa |
126 |
Q |
| |
|
|||| |||||| ||||||||||||| |
|
|
| T |
17361 |
gaattatatattttgatgtaaaacaa |
17386 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0627
Description:
Target: scaffold0627; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 261
Target Start/End: Complemental strand, 2328 - 2293
Alignment:
| Q |
226 |
tgttcatctttttcactaagaatttcataagttaat |
261 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2328 |
tgttcatcattttcactaagaatttcataagttaat |
2293 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 58209 - 58140
Alignment:
| Q |
13 |
ccttggtgagatttctcacaagtgtccaaagttatgaccagctaggatgtgtctttgggtagtgaaaggc |
82 |
Q |
| |
|
|||| |||||| ||||| |||| ||||||||||||||| | |||| ||| |||||||||||| |||||| |
|
|
| T |
58209 |
ccttagtgagagttctcgcaagcgtccaaagttatgacaaattagggtgtctctttgggtagttaaaggc |
58140 |
T |
|
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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 30749794 - 30749722
Alignment:
| Q |
1 |
acctttggtgtgccttggtgagatttctcacaagtgtccaaagttatgaccagctaggatgtgtctttgggtag |
74 |
Q |
| |
|
|||||||||| |||||| |||| |||||||||| || ||||||||||| || ||||| ||||| ||||||||| |
|
|
| T |
30749794 |
acctttggtgcaccttggagagagttctcacaagcgttcaaagttatgatcatctagggtgtgt-tttgggtag |
30749722 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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