View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_low_69 (Length: 257)
Name: NF12891_low_69
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_low_69 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 47457484 - 47457247
Alignment:
| Q |
1 |
caaatttgcacatgatagaaaaacccaaattgtaaaaacttcactagagtacatcatattatcttgttttccaatacgtatgtatgagtattatggtttg |
100 |
Q |
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| T |
47457484 |
caaatttgcacatgatagaaaaacccaaattgtaaaaacttccctagagtccatcatattatcttgttttccaatacgtatgtatgagtattatggtttg |
47457385 |
T |
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| Q |
101 |
acaactacaataatcattcagcaaagcactattcatatggacnnnnnnncaaattgaaggggaggatattgcgagctaagatcctctccatttatgtcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47457384 |
acaactacaataatcattcagcaaagcactattcatatggacaaaaaaacaaattgaaggggaggatattgcgagctaagatcctctccatttatgtcat |
47457285 |
T |
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| Q |
201 |
tttttagttgttccattttgttcctttttgattgatgt |
238 |
Q |
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||||||||||||| |||||||||||||||||||||||| |
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| T |
47457284 |
tttttagttgttctattttgttcctttttgattgatgt |
47457247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 6570008 - 6569980
Alignment:
| Q |
1 |
caaatttgcacatgatagaaaaacccaaa |
29 |
Q |
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| T |
6570008 |
caaatttgcacatgatagaaaaacccaaa |
6569980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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