View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12891_low_73 (Length: 250)
Name: NF12891_low_73
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_low_73 |
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| [»] scaffold0060 (1 HSPs) |
| | |
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| [»] scaffold0016 (1 HSPs) |
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| [»] scaffold0272 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 33710921 - 33711153
Alignment:
| Q |
1 |
aacaatttcgaacattcaaacaacctctagctcaactttaaacaaggtacatattttgaagtatataagtaaatcatagcatttcttttagttaagatgg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
33710921 |
aacaatttcgaacattcaaacaacctctagctcaactttaaacaagttatatattttgaagtatataagcaaatcatagcatttcttttagttaagatgg |
33711020 |
T |
|
| Q |
101 |
gactatttttagtgccccttttctcgcttctttatatttaagtcgagatgaaacataaaagaagaatttagtaacaactcataatcttacaataagaaag |
200 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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|
| T |
33711021 |
gactatttttagtgctc-ttttctcgcttctttatatttaagtcgagatgaaacataaaagaagaatttagtaacaactcataatcttacaatcataaag |
33711119 |
T |
|
| Q |
201 |
catttatccattggatgtgctcctctacaacaac |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
33711120 |
catttatccattggatgtgctcctctacaacaac |
33711153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 21198823 - 21199019
Alignment:
| Q |
1 |
aacaatttcgaacattcaaacaacctctagctcaactttaaacaaggtacatattttgaagtatataagtaa-atcatagcatttcttttagttaagatg |
99 |
Q |
| |
|
||||||||| |||||||||| | ||| |||||||||| |||||||| |||| |||||||||||||| || |||||||||||| ||||||| || || |
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| T |
21198823 |
aacaatttcaaacattcaaatcaactcaggctcaacttttaacaaggtgcataccttgaagtatataagcaatatcatagcattttttttagtcgaggtg |
21198922 |
T |
|
| Q |
100 |
ggactatttttagtgccccttttctcgcttctttatatttaagtcgagatgaaacataaaagaagaatttagtaacaactcataatcttacaataag |
196 |
Q |
| |
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||||||||||||||||| ||||| |||| |||| ||| ||| ||||||||||||||||||| |||| | ||||||||||||||||||| ||||| |
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|
| T |
21198923 |
agactatttttagtgcccaatttcttgcttttttaagtttcagttgagatgaaacataaaagaaaaattcattaacaactcataatcttactataag |
21199019 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 73 - 216
Target Start/End: Original strand, 21313702 - 21313845
Alignment:
| Q |
73 |
atcatagcatttcttttagttaagatgggactatttttagtgccccttttctcgcttctttatatttaagtcgagatgaaacataaaagaagaatttagt |
172 |
Q |
| |
|
|||||||||||| ||| || || ||||||||| |||||| ||| |||||| |||||||||| ||| ||||||| |||||||||||||||||||| ||| |
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| T |
21313702 |
atcatagcatttgtttctgtccaggtgggactatatttagttccctttttcttgcttctttatgtttcagtcgagttgaaacataaaagaagaattcagt |
21313801 |
T |
|
| Q |
173 |
aacaactcataatcttacaataagaaagcatttatccattggat |
216 |
Q |
| |
|
||| | ||||||| || | ||||| || | |||||| ||||||| |
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|
| T |
21313802 |
aacgattcataattttcctataagcaaacgtttatcaattggat |
21313845 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 98 - 215
Target Start/End: Original strand, 21173086 - 21173206
Alignment:
| Q |
98 |
tgggactatttttagtgccccttttctcgcttctttatatttaagtcgagatgaaacataaaagaagaatttagtaacaactcataatcttacaataaga |
197 |
Q |
| |
|
||||| ||| ||||||| ||||||||| ||||||||| ||| | |||||||| ||||||||||||||||| | |||||||||||||| ||| ||||| |
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|
| T |
21173086 |
tgggattatatttagtgtcccttttcttgcttctttaattttcaatcgagatggaacataaaagaagaattcaacaacaactcataatcataccataagc |
21173185 |
T |
|
| Q |
198 |
aagc---atttatccattgga |
215 |
Q |
| |
|
|||| |||||||||||||| |
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|
| T |
21173186 |
aagcataatttatccattgga |
21173206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 21166711 - 21166754
Alignment:
| Q |
172 |
taacaactcataatcttacaataagaaagcatttatccattgga |
215 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
21166711 |
taacagctcataatcttacaataagaaagcatttacccattgga |
21166754 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 213
Target Start/End: Complemental strand, 20998416 - 20998350
Alignment:
| Q |
150 |
gaaacataaaagaagaatttagtaacaac---tcataatcttacaataagaaagcatttatccattg |
213 |
Q |
| |
|
||||| |||||||||||||||| |||||| |||||||||||| ||||| |||||| ||||||||| |
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|
| T |
20998416 |
gaaacttaaaagaagaatttagcaacaacaactcataatcttactataagcaagcatctatccattg |
20998350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 21218114 - 21218154
Alignment:
| Q |
175 |
caactcataatcttacaataagaaagcatttatccattgga |
215 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
21218114 |
caactcataatcttactataagtaagcatttatccattgga |
21218154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 167
Target Start/End: Original strand, 21108810 - 21108904
Alignment:
| Q |
73 |
atcatagcatttcttttagttaagatgggactatttttagtgccccttttctcgcttctttatatttaagtcgagatgaaacataaaagaagaat |
167 |
Q |
| |
|
|||||||| ||||||| | | || |||||||||||| ||||||||||||| |||||||| ||| |||| ||||||||| ||||| |||||| |
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|
| T |
21108810 |
atcatagcctttctttcattagaggtgggactattttctgtgccccttttcttttttctttatgtttcagtcaagatgaaacgtaaaacaagaat |
21108904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 10 - 190
Target Start/End: Complemental strand, 21888 - 21709
Alignment:
| Q |
10 |
gaacattcaaacaacctctagctcaactttaaacaaggtacatattttgaagtatataagtaaatcatagcatttcttttagttaagatgggactatttt |
109 |
Q |
| |
|
|||||||||||||||| | | |||||||||| | ||||||||||||||||||||| || |||||||| |||||||||||||| || ||||||||| || |
|
|
| T |
21888 |
gaacattcaaacaaccccacacccaactttaaatatggtacatattttgaagtatatgagcaaatcata-catttcttttagttgaggtgggactatatt |
21790 |
T |
|
| Q |
110 |
tagtgccccttttctcgcttctttatatttaagtcgagatgaaacataaaagaagaatttagtaacaactcataatcttac |
190 |
Q |
| |
|
||||||||||||| | ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
21789 |
tagtgccccttttattgcttctttaagtttaagtcgagatgaaacataaaagaacaatttagtaacaactcataatcttac |
21709 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 98 - 215
Target Start/End: Original strand, 24943669 - 24943786
Alignment:
| Q |
98 |
tgggactatttttagtgccccttttctcgcttctttatatttaagtcgagatgaaacataaaagaagaatttagtaacaactcataatcttacaataaga |
197 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||| ||| |||||||||| ||||||||||||||||| || |||||||||||||| ||| ||||| |
|
|
| T |
24943669 |
tgggactatttttagtgtcccttttcttgcttctttaagtttcagtcgagatggaacataaaagaagaattcagcaacaactcataatcataccataagc |
24943768 |
T |
|
| Q |
198 |
aagcatttatccattgga |
215 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
24943769 |
aagcatttatccattgga |
24943786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 213
Target Start/End: Complemental strand, 70906 - 70767
Alignment:
| Q |
73 |
atcatagcatttcttttagttaagatgggactatttttagtgccccttttctcgcttctttatatttaagtcgagatgaaacataaaagaagaatttagt |
172 |
Q |
| |
|
|||||||||||| ||| || || ||| |||||||||||||| ||||||| |||| |||| ||||||| |||||| ||||||||||||||| | | |
|
|
| T |
70906 |
atcatagcatttttttcggtcgaggtggaactatttttagtgcatcttttcttgctt-tttaagtttaagttgagatggaacataaaagaagaactcatc |
70808 |
T |
|
| Q |
173 |
aacaactcataatcttacaataagaaagcatttatccattg |
213 |
Q |
| |
|
|||||||||||||||||| | ||| |||||||||||||||| |
|
|
| T |
70807 |
aacaactcataatcttactacaagcaagcatttatccattg |
70767 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 168
Target Start/End: Complemental strand, 8811 - 8717
Alignment:
| Q |
73 |
atcatagcatttcttttagttaagatgggactatttttagtgccccttttctcgcttctttatatttaagtcgagatgaaacataaaagaagaatt |
168 |
Q |
| |
|
|||||||||||||||| || || |||||||||||||||||| | ||||| | || |||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
8811 |
atcatagcatttctttcggtcgaggtgggactatttttagtgctcattttcatgttt-tttaagttttagtcgagatgaaacataaaagaagaatt |
8717 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 3797 - 3737
Alignment:
| Q |
152 |
aacataaaagaagaatttagtaacaactcataatcttacaataagaaagcatttatccatt |
212 |
Q |
| |
|
||||||||||||||||| || ||||||||| |||||||| ||||| ||| |||||| |||| |
|
|
| T |
3797 |
aacataaaagaagaattcagcaacaactcaaaatcttactataagcaagtatttattcatt |
3737 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 13119797 - 13119853
Alignment:
| Q |
73 |
atcatagcatttcttttagttaagatgggactatttttagtgccccttttctcgctt |
129 |
Q |
| |
|
||||||||||||||||| || || ||| || |||||||||||||||||||| |||| |
|
|
| T |
13119797 |
atcatagcatttcttttggtcgaggtggaacaatttttagtgccccttttcttgctt |
13119853 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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