View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_low_74 (Length: 250)
Name: NF12891_low_74
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_low_74 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 2484534 - 2484775
Alignment:
| Q |
1 |
ttttagtttcaacatgtttgcaaccaactaaatttagatgactcaacggccaatcaacctctagatcaatttttggcttactttagagcttccaaatcct |
100 |
Q |
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| T |
2484534 |
ttttagtttcaacatgtttgcaaccagctaaatttagatgactcaaaggccaaccaacctctagatcaatttttggcttactgtagagcttccaaatcct |
2484633 |
T |
|
| Q |
101 |
tttctatgcccaactttgtagccatattctaacatgaatcaactaacttattattttatgtgcccacattgcattcacagtgttcgctctattttctaaa |
200 |
Q |
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| T |
2484634 |
tttctatgcccaactttgtagccatattctaacatgaatcaactaacttattattttatgtccccacattgcattcgcagagttcgctctattttctaaa |
2484733 |
T |
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| Q |
201 |
tg---tcatcattgtcctctttcttccgtacgattcctctct |
239 |
Q |
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| T |
2484734 |
tgtcatcatcattgtcctctttcttccgtacgattcctctct |
2484775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 11 - 239
Target Start/End: Complemental strand, 7438258 - 7438019
Alignment:
| Q |
11 |
aacatgtttgcaaccaactaaat----ttagatgactcaacggccaatcaacctctagatcaatttttggcttactttagagcttccaaatccttttcta |
106 |
Q |
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||||||||||||||||||||| | |||||||||||| |||||| |||||||||||||||||||| ||||||| | |||| |||||||||||||||| |
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| T |
7438258 |
aacatgtttgcaaccaactaactatacttagatgactcagtggccaaccaacctctagatcaattttttgcttactgtggagcctccaaatccttttcta |
7438159 |
T |
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| Q |
107 |
tgcccaactttgtagccatattctaacatgaatca----actaacttattattttatgtgcccacattgcattca-cagtgttcgctctattttctaaat |
201 |
Q |
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|| |||||||||||||||||||||||||||||||| | | | ||||| |||| ||| ||| || |||||| | ||| ||| |||||||||||||||| |
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| T |
7438158 |
tgtccaactttgtagccatattctaacatgaatcaccatagttatttattgttttctgttcccgcactgcatttagcagagtt-gctctattttctaaat |
7438060 |
T |
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| Q |
202 |
g---tcatcattgtcctctttcttccgtacgattcctctct |
239 |
Q |
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| T |
7438059 |
gtcatcatcattgtcctctttcttccgtatgattcctctct |
7438019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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