View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_low_78 (Length: 243)
Name: NF12891_low_78
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_low_78 |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-125; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 5685066 - 5685291
Alignment:
| Q |
1 |
ccacttattcctaatccatttcaacctcccccagcaagtcctccaccactcattccaaatccatttcagcctccaccatcaagtccaccaccatcatttc |
100 |
Q |
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| T |
5685066 |
ccacttattcctaatccatttcaacctcccccagcaagtcctccaccactcattccaaatccatttcagcctccaccatcaagtccaccaccatcatttc |
5685165 |
T |
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| Q |
101 |
cttttccaccaatagtaataccaggtttaactccatcaccaccgccgccgccaccaccaaaatcaatttttcctgctcccttacttccttttcctccact |
200 |
Q |
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| T |
5685166 |
cttttccaccaatagtaataccaggtttaactccatcaccaccgccgccgccaccaccaaaatcaatttttcctgctcccttacttccttttcctccact |
5685265 |
T |
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| Q |
201 |
gttcccaccacctcttagccctggct |
226 |
Q |
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| T |
5685266 |
gttcccaccacctcttagccctggct |
5685291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 5685024 - 5685113
Alignment:
| Q |
1 |
ccacttattcctaatccatttcaacctcccccagcaagtcctccaccactcattccaaatccatttcagcctccaccatcaagtccaccacca |
93 |
Q |
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| T |
5685024 |
ccacttattccaaatccatttcaacctcctccatcaaatcc---accacttattcctaatccatttcaacctcccccagcaagtcctccacca |
5685113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 5685020 - 5685069
Alignment:
| Q |
42 |
tccaccactcattccaaatccatttcagcctccaccatcaagtccaccac |
91 |
Q |
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| T |
5685020 |
tccaccacttattccaaatccatttcaacctcctccatcaaatccaccac |
5685069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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