View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_low_83 (Length: 241)
Name: NF12891_low_83
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_low_83 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 11908481 - 11908257
Alignment:
| Q |
1 |
tggtaggggtgagtgaaatcgcaaaatccaccaatnnnnnnnggttaaaacctcctaattgctaggatccagtttttgatttattgtaaaaaatttagcc |
100 |
Q |
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| T |
11908481 |
tggtaggggtgagtgaaatcgcaaaatccaccaataaaaaaaggttaaaacctcctaattgctaggatccagtttttgatttattgtaaaaattttagcc |
11908382 |
T |
|
| Q |
101 |
cataaagtgacttaaatatatacannnnnnnnagagattagatatatacattctaccttcatacctcaagaagttttatagcattttcacttaggaaact |
200 |
Q |
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||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11908381 |
cataaagtgacttaa-tatatacattttttttagagattagatatatacattctaccttcatacctcaagaagttttatagcattttcacttaggaaact |
11908283 |
T |
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| Q |
201 |
tgtcaaatcatatactccataaattt |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
11908282 |
tgtcaaatcatatactccataaattt |
11908257 |
T |
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