View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_low_84 (Length: 240)
Name: NF12891_low_84
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_low_84 |
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| [»] chr4 (9 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 31 - 240
Target Start/End: Complemental strand, 8036333 - 8036124
Alignment:
| Q |
31 |
ttttgagcaatttatgtcttgggttctgtccaatagagatcactcatattcactgcttaatcttactattaatgcttggatgcgtggtggtgaagaagag |
130 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8036333 |
ttttgagcaatttatgtcttgggttctgtccaatagagatcactcatattcactgcttaatcttactattaatgcttggatgcgtggtggtgaagaagag |
8036234 |
T |
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| Q |
131 |
ctatataaactcattaatataaatccactactctctttgaaaattaacgggtatgggaagtgtccaaaatctgagttactccctttaatctttggctctc |
230 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8036233 |
ctatataaactcattaatataaatccactactctctttgaaaattaatgggtatgggaagtgtccaaaatctgagttactccctttaatctttggctctc |
8036134 |
T |
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| Q |
231 |
actctttgac |
240 |
Q |
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| |||||||| |
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| T |
8036133 |
attctttgac |
8036124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 24 - 240
Target Start/End: Original strand, 8410838 - 8411057
Alignment:
| Q |
24 |
atgatagttttgagcaatttatgtcttgggttctgtccaatagagatcactcatattcactgcttaatcttactattaatgcttggatgcgtggtggtga |
123 |
Q |
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|||| |||||| || | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | | | ||| |
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| T |
8410838 |
atgaaagttttaagaactttatgtcttgggttctgtccagtagagatcactcatattcactgcttaatcttactattaatgcttggatacaggaagatga |
8410937 |
T |
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| Q |
124 |
ag---aagagctatataaactcattaatataaatccactactctctttgaaaattaacgggtatgggaagtgtccaaaatctgagttactccctttaatc |
220 |
Q |
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| T |
8410938 |
agaagaagagctatgcaaactcattaatataaatccactactctctttgaaaattaatgggtatggaaagtgtccaaaatctgagttactccctttaatc |
8411037 |
T |
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| Q |
221 |
tttggctctcactctttgac |
240 |
Q |
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| T |
8411038 |
tttggctctcactctttgac |
8411057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 39 - 240
Target Start/End: Complemental strand, 8041739 - 8041541
Alignment:
| Q |
39 |
aatttatgtcttgggttctgtccaatagagatcactcatattcactgcttaatcttactattaatgcttggatgcgtggtggtgaagaagagctatataa |
138 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||| |||||||||| | | | |||||| ||||| ||| |
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| T |
8041739 |
aatttatgtcttgggttctgtccagtagagatcactcatattccctacttaatcttactattgatgcttggatacaggaagatgaaga---gctatgtaa |
8041643 |
T |
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| Q |
139 |
actcattaatataaatccactactctctttgaaaattaacgggtatgggaagtgtccaaaatctgagttactccctttaatctttggctctcactctttg |
238 |
Q |
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| T |
8041642 |
actcattaatataaatccgctactctctttgaaaattaatgggtatggaaggtgtccaaaatctgagttacttcctttaatctttggctctcactctttg |
8041543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 9138947 - 9138722
Alignment:
| Q |
18 |
cttcaaatgatagttttgagcaatttatgtcttgggttctgtccaatagagatcactcatattcactgcttaatcttactattaatgcttggatgcgtgg |
117 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||| |||||||||||||| ||||||| ||| || |
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| T |
9138947 |
cttcgaatgatagttttgagcaatttatgtcttgggttctgtcgagtagagatcactcatcttcactacttaatcttactatccatgcttgtatggacgg |
9138848 |
T |
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| Q |
118 |
tggtgaagaagagctatataaactcattaatataaatccactactctctttgaaaattaacgggtatgggaagtgtccaaaatctgag---ttactccct |
214 |
Q |
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| T |
9138847 |
agcggaagaagacctatataaactcattaaaataaatccacttctctctttgaaaatttttgggtatgcaaagtgtccaaaatctgagttattactccct |
9138748 |
T |
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| Q |
215 |
ttaatctttggctctcactctttgac |
240 |
Q |
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||| |||||||||||| ||||||||| |
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| T |
9138747 |
ttactctttggctctcgctctttgac |
9138722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 8416506 - 8416567
Alignment:
| Q |
39 |
aatttatgtcttgggttctgtccaatagagatcactcatattcactgcttaatcttactatt |
100 |
Q |
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|||||||||||||||||||||||| ||||||||| |||||||| || |||||||| |||||| |
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| T |
8416506 |
aatttatgtcttgggttctgtccattagagatcattcatattccctacttaatctaactatt |
8416567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 8354777 - 8354734
Alignment:
| Q |
197 |
aaatctgagttactccctttaatctttggctctcactctttgac |
240 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8354777 |
aaatccgagttactccctttaatctttggctctcactctttgac |
8354734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 8359325 - 8359282
Alignment:
| Q |
197 |
aaatctgagttactccctttaatctttggctctcactctttgac |
240 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
8359325 |
aaatatgagttcctccctttaatctttggctctcactctttgac |
8359282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 240
Target Start/End: Original strand, 8416620 - 8416659
Alignment:
| Q |
201 |
ctgagttactccctttaatctttggctctcactctttgac |
240 |
Q |
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| T |
8416620 |
ctgagatactcccgttaatctttggctctcactctttgac |
8416659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 8359490 - 8359437
Alignment:
| Q |
47 |
tcttgggttctgtccaatagagatcactcatattcactgcttaatcttactatt |
100 |
Q |
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| T |
8359490 |
tcttgggttcggtctagtagagatcactcatgttccctacttaatcttactatt |
8359437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 39 - 240
Target Start/End: Original strand, 33084019 - 33084221
Alignment:
| Q |
39 |
aatttatgtcttgggttctgtccaatagagatcactcatattcactgcttaatcttactattaatgcttggatgcgtggtggtgaagaagagctatataa |
138 |
Q |
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|||||||||||||| ||||||||| |||||||||||| | |||||| |||||||||||| || ||| |||||||| || |||| ||| |||| ||| |
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| T |
33084019 |
aatttatgtcttggattctgtccagtagagatcactcctgttcactacttaatcttactgttgatggttggatgc-tg-----gaaggagacctatgtaa |
33084112 |
T |
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| Q |
139 |
actcattaatataaatccactactctctttgaaaattaacgggtatgggaag---tgtccaaaatctgagt----tactccctttaatctttggctctca |
231 |
Q |
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|||| |||| ||||||||||| ||||||||||||||||| ||| | || | |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
33084113 |
actcgttaaaataaatccacttctctctttgaaaattaatgggcgtcggtcgtgctgtccaaaatctgagttacgtactccctttaatctttggctctca |
33084212 |
T |
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| Q |
232 |
ctctttgac |
240 |
Q |
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||||||||| |
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| T |
33084213 |
ctctttgac |
33084221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 5476320 - 5476393
Alignment:
| Q |
27 |
atagttttgagcaatttatgtcttgggttctgtccaatagagatcactcatattcactgcttaatcttactatt |
100 |
Q |
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|||||||| || | |||| ||||||||||||||| | ||||||||| |||| ||||||| |||||||||||| |
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| T |
5476320 |
atagttttaagaactttaagtcttgggttctgtctagtagagatcaatcatgttcactgtggaatcttactatt |
5476393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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