View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_low_85 (Length: 240)
Name: NF12891_low_85
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_low_85 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 14283211 - 14283418
Alignment:
| Q |
15 |
cacagataatggaagattaaccaaagagaatatgtcatctattctcaaattaagctccaactttgtttcaccaacggttatcattcgaacaatagctgaa |
114 |
Q |
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| T |
14283211 |
cacagataatggaagattaaccaaagagaatatgtcatctattctcaaattaagctccaactttgtttcaccaacggttatcattcgaacaatagctgaa |
14283310 |
T |
|
| Q |
115 |
gcagtgaacaaagaagcaatcacaatgtttgctgcccaataaattctaagtggtaaagggtgtgtggaagctttcaactttatctcatgtaccattagaa |
214 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14283311 |
gcagtgaacaaagaagcaatcacaaagtttgctgcccaataaattctaagtggtaaagggtgtgtggaagctttcaactttatctcatgtaccattagaa |
14283410 |
T |
|
| Q |
215 |
tcactatg |
222 |
Q |
| |
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|||||||| |
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| T |
14283411 |
tcactatg |
14283418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 14304969 - 14305175
Alignment:
| Q |
15 |
cacagataatggaagattaaccaaagagaatatgtcatctattctcaaattaagctccaactttgtttcaccaacggttatcattcgaacaatagctgaa |
114 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||| || ||||||| |||||||||||| ||| |
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| T |
14304969 |
cacagataatggaagattaaccaatgagaatatgtcatctattctcaaactaagctccaacttttcttcacggacagttatcaatcgaacaatagccgaa |
14305068 |
T |
|
| Q |
115 |
gcagtgaacaaagaagcaatcacaatgtttgctgcccaataaattctaagtggtaaagggtgtgtggaagctttcaactttatctcatgtaccattagaa |
214 |
Q |
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| T |
14305069 |
acagcaaacaaagtagcaatcacaaagtttgctatccaatagattcttagtgataaagggtgtttggaagatttgaactttttctcatgtaacattagaa |
14305168 |
T |
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| Q |
215 |
tcactat |
221 |
Q |
| |
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||||||| |
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| T |
14305169 |
tcactat |
14305175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 14321360 - 14321566
Alignment:
| Q |
15 |
cacagataatggaagattaaccaaagagaatatgtcatctattctcaaattaagctccaactttgtttcaccaacggttatcattcgaacaatagctgaa |
114 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||| ||||| |||||||||||||| |||||| || ||||||| |||||||||||||||| |
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| T |
14321360 |
cacagataatggaagattaaccaatgagaatatatcatctattttcaaactaagctccaacttttcttcaccgacagttatcaatcgaacaatagctgaa |
14321459 |
T |
|
| Q |
115 |
gcagtgaacaaagaagcaatcacaatgtttgctgcccaataaattctaagtggtaaagggtgtgtggaagctttcaactttatctcatgtaccattagaa |
214 |
Q |
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|||| ||||||| ||||| |||| ||||||| |||||| ||||| |||| |||||||||| |||||| ||| |||||| |||||||||||||||| | |
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| T |
14321460 |
gcagcaaacaaagttgcaattacaaagtttgctatccaatagattcttagtgataaagggtgtttggaagatttgaactttttctcatgtaccattagta |
14321559 |
T |
|
| Q |
215 |
tcactat |
221 |
Q |
| |
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||||||| |
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|
| T |
14321560 |
tcactat |
14321566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 25886045 - 25886245
Alignment:
| Q |
18 |
agataatggaagattaaccaaagagaatatgtcatctattctcaaattaagctccaactttgtttcaccaacggttatcattcgaacaatagctgaagca |
117 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||| |||| | ||| ||||| | || ||||||| | |
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| T |
25886045 |
agataatggaagattaaccaatgagaatatgtcatctattctcaaactaagttccaacttctcctcactggcatttacaattcggaaaacagctgaaata |
25886144 |
T |
|
| Q |
118 |
gtgaacaaagaagcaatcacaatgtttgctgcccaataaattctaagtggtaaagggtgtgtggaagctttcaactttatctcatgtaccattagaatca |
217 |
Q |
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| T |
25886145 |
gcaaacaaagaagcaatcacaaagtttgctatccaatagattcttagtgataaagggtgtttggaagatttgaactttttctcatgtaacattagaatca |
25886244 |
T |
|
| Q |
218 |
c |
218 |
Q |
| |
|
| |
|
|
| T |
25886245 |
c |
25886245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 44349888 - 44350092
Alignment:
| Q |
17 |
cagataatggaagattaaccaaagagaatatgtcatctattctcaaattaagctccaactttgtttcaccaacggttatcattcgaacaatagctgaagc |
116 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||||| |||| |||| ||| |||| ||| ||||| | || ||||||| |
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| T |
44349888 |
cagataatggaagattaaccaatgagaatatatcatctattctcaaactaagttccattttttcctcactggtatttacaattcggaaaacagctgaaat |
44349987 |
T |
|
| Q |
117 |
agtgaacaaagaagcaatcacaatgtttgctgcccaataaattctaagtggtaaagggtgtgtggaagctttcaactttatctcatgtaccattagaatc |
216 |
Q |
| |
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|| ||||||||||||||||||| |||| || |||||| ||||| || | |||||||||| |||||| ||| |||||| ||| |||| |||||||||| |
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| T |
44349988 |
agcaaacaaagaagcaatcacaaagtttactatccaatagattcttagggataaagggtgtttggaagatttgaacttttcctcgtgtaacattagaatc |
44350087 |
T |
|
| Q |
217 |
actat |
221 |
Q |
| |
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||||| |
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|
| T |
44350088 |
actat |
44350092 |
T |
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