View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12891_low_86 (Length: 240)
Name: NF12891_low_86
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_low_86 |
 | |
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| [»] scaffold0955 (1 HSPs) |
| | |
|
| [»] scaffold0070 (2 HSPs) |
| | |
|
| [»] scaffold0864 (1 HSPs) |
| | |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 25383891 - 25383662
Alignment:
| Q |
1 |
actggaagtatcatttgccctttgttttttctacactcgagtatcttcacaacttcatccaaacaccattttgaagttgcatagttttttgaaaaatcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25383891 |
actggaagtatcatttgccctttgttttttctacactcgagtatcttcacaacttcatccaaacaccattttgaagttgcatagttttttgaaaaatcaa |
25383792 |
T |
|
| Q |
101 |
tcacataaagttttgcttcatcgatcgccttgagaagtggttgtgatatttcatctcctctttcaagattatcctctatgtaagtcttgatatctaacct |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
25383791 |
tcacata----gttgcttcatcgatcgccttgagaagtggttgtgatatttcatctcctcttacaagattatcctctatgtaagtcttgatatctaacct |
25383696 |
T |
|
| Q |
201 |
tcttagtgcactattgagatggcttgtgaatgtc |
234 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |
|
|
| T |
25383695 |
tcttagtgcactattgagatggcttttgaatgtc |
25383662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 25692215 - 25691982
Alignment:
| Q |
1 |
actggaagtatcatttgccctttgttttttctacactcgagtatcttcacaacttcatccaaacaccattttgaagttgcatagttttttgaaaaatcaa |
100 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
25692215 |
actggaagtataatttgccgtttgttttttctacactcgagtattttcacaacttcatccaaacaccattttgaagttgcatagttttttgaaaaaacaa |
25692116 |
T |
|
| Q |
101 |
tcacataaagttttgcttcatcgatcgccttgagaagtggttgtgatatttcatctcctctttcaagattatcctctatgtaagtcttgatatctaacct |
200 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| || ||||||||||| |||||||||||||| |
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|
| T |
25692115 |
tcacaaatagttttgcttcatcgatcgccttgagaagtgcttgcgatatttcatctcctctttcaagattgtcatctatgtaagttttgatatctaacct |
25692016 |
T |
|
| Q |
201 |
tcttagtgcactattgagatggcttgtgaatgtc |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
25692015 |
tcttagtgcactattgagatggcttgtgaatgtc |
25691982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 25645749 - 25645560
Alignment:
| Q |
17 |
gccctttgttttttctacactcgagtatcttcacaacttcatccaaacaccattttgaagttgcatagttttttgaaaaatcaatcacataaagttttgc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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|
| T |
25645749 |
gccctttgttttttctacactcgagtattttcacaacttcatccaaacaccattttgaagttgcatagttttt-gaaaaaacaatcacataaagttttgc |
25645651 |
T |
|
| Q |
117 |
ttcatcgatcgccttgagaagtggttgtgatatttcatctcctctttcaagattatcctctatgtaagtcttgatatctaaccttcttagt |
207 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||| |
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|
| T |
25645650 |
ttcatcgatcgccttgagaagcgcttgtgatatttcatctcctctttcaagattgtcatctatgtaagttttgatatctaaccttcttagt |
25645560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 13 - 234
Target Start/End: Complemental strand, 25388536 - 25388319
Alignment:
| Q |
13 |
atttgccctttgttttttctacactcgagtatcttcacaacttcatccaaacaccattttgaagttgcatagttttttgaaaaatcaatcacataaagtt |
112 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||| ||| | |||||| |
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|
| T |
25388536 |
atttgccctttgtgttttctacactcgagtattttcacaacttcatccaaacaccattttgaagttgcataattttttggaaaaacaa----agaaagtt |
25388441 |
T |
|
| Q |
113 |
ttgcttcatcgatcgccttgagaagtggttgtgatatttcatctcctctttcaagattatcctctatgtaagtcttgatatctaaccttcttagtgcact |
212 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
25388440 |
ttgcttcatcgatcgccttgagaaacgcttgtgatatttcatctcctctttatagattgtcatctatgtaagtcttgatatcaaaccttcttagtgcact |
25388341 |
T |
|
| Q |
213 |
attgagatggcttgtgaatgtc |
234 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
25388340 |
attgaaatggcttgtgaatgtc |
25388319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 54 - 152
Target Start/End: Complemental strand, 25450977 - 25450879
Alignment:
| Q |
54 |
ttcatccaaacaccattttgaagttgcatagttttttgaaaaatcaatcacataaagttttgcttcatcgatcgccttgagaagtggttgtgatatttc |
152 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
25450977 |
ttcatccaagcaccattttgaagttgcatagtttttcgaaaaaataatcacagaaagttttgcttcatcgatcgccttgagaagtgcttgtgatatttc |
25450879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 148 - 233
Target Start/End: Complemental strand, 25446024 - 25445939
Alignment:
| Q |
148 |
atttcatctcctctttcaagattatcctctatgtaagtcttgatatctaaccttcttagtgcactattgagatggcttgtgaatgt |
233 |
Q |
| |
|
|||||||| |||||||| | ||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
25446024 |
atttcatcccctctttctaaattgtcatctatgtaagtcttgatatctaaccttcttaatgcactattgagatggcttgtgaatgt |
25445939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 92
Target Start/End: Original strand, 6145602 - 6145640
Alignment:
| Q |
54 |
ttcatccaaacaccattttgaagttgcatagttttttga |
92 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
6145602 |
ttcatccaaacaccactttgaagttgcatagtcttttga |
6145640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 25059167 - 25059220
Alignment:
| Q |
111 |
ttttgcttcatcgatcgccttgagaagtggttgtgatatttcatctcctctttc |
164 |
Q |
| |
|
|||||| |||||||| ||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
25059167 |
ttttgcatcatcgattgccttgagaagtgaaggtgatatttcatcacctctttc |
25059220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 25093564 - 25093617
Alignment:
| Q |
111 |
ttttgcttcatcgatcgccttgagaagtggttgtgatatttcatctcctctttc |
164 |
Q |
| |
|
|||||| |||||||| ||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
25093564 |
ttttgcatcatcgattgccttgagaagtgaaggtgatatttcatcacctctttc |
25093617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0955 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: scaffold0955
Description:
Target: scaffold0955; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 13 - 233
Target Start/End: Complemental strand, 3213 - 2993
Alignment:
| Q |
13 |
atttgccctttgttttttctacactcgagtatcttcacaacttcatccaaacaccattttgaagttgcatagttttttgaaaaatcaatcacataaagtt |
112 |
Q |
| |
|
|||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
3213 |
atttgctctttgtattttctacactcgagtattttcacaacttcatccaaacaccattttgaagttgcatagttttttgaaaaaacaatcacagaaagtt |
3114 |
T |
|
| Q |
113 |
ttgcttcatcgatcgccttgagaagtggttgtgatatttcatctcctctttcaagattatcctctatgtaagtcttgatatctaaccttcttagtgcact |
212 |
Q |
| |
|
|||| |||||||| |||||||||| | |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3113 |
ttgcctcatcgatttccttgagaagcgcttgtgatatttcatctcctctttcaagattgtcatctatgtaagtcttgatatctaaccttcttagtgcact |
3014 |
T |
|
| Q |
213 |
attgagatggcttgtgaatgt |
233 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
3013 |
attgagatggcttgtgaatgt |
2993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 20 - 235
Target Start/End: Original strand, 39239 - 39454
Alignment:
| Q |
20 |
ctttgttttttctacactcgagtatcttcacaacttcatccaaacaccattttgaagttgcatagttttttgaaaaatcaatcacataaagttttgcttc |
119 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||| || |
|
|
| T |
39239 |
ctttgtattttctacactcgagtattttcacaacttcatccaaacactattttgaagttgcatagttttttgaaaaaacaatcacagaaagttttgcctc |
39338 |
T |
|
| Q |
120 |
atcgatcgccttgagaagtggttgtgatatttcatctcctctttcaagattatcctctatgtaagtcttgatatctaaccttcttagtgcactattgaga |
219 |
Q |
| |
|
|||||| ||||||||||| | |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39339 |
atcgattgccttgagaagcgcttgtgatatttcatctcctctttcaagattgtcatctatgtaagtcttgatatctaaccttcttagtgcactattgaga |
39438 |
T |
|
| Q |
220 |
tggcttgtgaatgtcc |
235 |
Q |
| |
|
||||||| || ||||| |
|
|
| T |
39439 |
tggcttgagattgtcc |
39454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 19717 - 19939
Alignment:
| Q |
13 |
atttgccctttgttttttctacactcgagtatcttcacaacttcatccaaacaccattttgaagttgcatagtttttt-gaaaaatcaatcacataaagt |
111 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| |
|
|
| T |
19717 |
atttaccctttgttttttctacactcgactattttcacaacttcatccaaacaccattttgaagttgcatagttttttcgaaaagacaatcacagaaagt |
19816 |
T |
|
| Q |
112 |
tttgcttcatcgatcgccttgagaagtggttgtgatatttcatctcctctttcaagattatcctctatgtaagtcttgatatctaaccttcttagtgcac |
211 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||| |||||||| | ||| || ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19817 |
tttgcttcatcgatcgccttgagaagcgcttgtgatatttcatcccctctttctaaattgtcatctatgtaagtcttgatatctaaccttcttaatgcac |
19916 |
T |
|
| Q |
212 |
tattgagatggcttgtgaatgtc |
234 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
19917 |
tattgagatggcttgtggatgtc |
19939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 191
Target Start/End: Original strand, 16502653 - 16502804
Alignment:
| Q |
40 |
agtatcttcacaacttcatccaaacaccattttgaagttgcatagttttttgaaaaatcaatcacataaagttttgcttcatcgatcgccttgagaagtg |
139 |
Q |
| |
|
||||| ||||||| ||||||||||||||| |||||| | |||||||||| || ||| ||| |||| |||| |||| ||| ||||| ||| | ||||||| |
|
|
| T |
16502653 |
agtattttcacaagttcatccaaacaccactttgaattagcatagttttcagacaaaacaaccacagaaagctttgattcctcgattgccctaagaagtg |
16502752 |
T |
|
| Q |
140 |
gttgtgatatttcatctcctctttcaagattatcctctatgtaagtcttgat |
191 |
Q |
| |
|
| |||||||||||| ||||| ||||||| | |||||||| || ||||| |
|
|
| T |
16502753 |
cgtttgatatttcatcccctctcacaagattgtagtctatgtaggttttgat |
16502804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0864 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0864
Description:
Target: scaffold0864; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 4487 - 4440
Alignment:
| Q |
54 |
ttcatccaaacaccattttgaagttgcatagttttttgaaaaatcaat |
101 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||| ||| |||| |
|
|
| T |
4487 |
ttcatccaaacaccattttgaattggcatagttttttgagaaaacaat |
4440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 22589144 - 22589191
Alignment:
| Q |
54 |
ttcatccaaacaccattttgaagttgcatagttttttgaaaaatcaat |
101 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||| ||| |||| |
|
|
| T |
22589144 |
ttcatccaaacaccattttgaattggcatagttttttgagaaaacaat |
22589191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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