View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12891_low_89 (Length: 238)

Name: NF12891_low_89
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12891_low_89
NF12891_low_89
[»] chr3 (16 HSPs)
chr3 (1-223)||(8111641-8111863)
chr3 (1-223)||(8095453-8095675)
chr3 (5-198)||(8095319-8095512)
chr3 (5-198)||(8111507-8111700)
chr3 (44-146)||(8111144-8111246)
chr3 (119-195)||(8041185-8041261)
chr3 (44-120)||(8094956-8095032)
chr3 (97-198)||(8095273-8095374)
chr3 (59-147)||(8094905-8094993)
chr3 (124-219)||(8040954-8041049)
chr3 (1-144)||(8041098-8041241)
chr3 (115-198)||(8111479-8111562)
chr3 (1-87)||(8040948-8041034)
chr3 (124-192)||(8071894-8071962)
chr3 (110-180)||(8072350-8072420)
chr3 (31-87)||(8111842-8111898)


Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 8111641 - 8111863
Alignment:
Q  1 ttcaggaacattaaacttagtcagttcatgctttggcatttcaggtactttaggaatttcaggttttggcaattcaggaaccttaggttgctctagctta 100  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  8111641 ttcaggaacattaaacttaggcagttcatgctttggcatttcaggtactttaggaatttcaggttttggcaattcaggaaccttaggttgctctagttta 8111740  T
Q  101 ggtgactcggggattttaggtagctcgggtttgggcaattcaggaacattaaacttgggtagttcaggttttggcaattcgggcaccttaggaatttcta 200  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8111741 ggtgattcgggaattttaggtagctcgggtttgggcaattcaggaacattaaacttgggtagttcaggttttggcaattcgggcaccttaggaatttcta 8111840  T
Q  201 actttggcatttcaggtacgttt 223  Q
    |||||||||||||||||||||||    
T  8111841 actttggcatttcaggtacgttt 8111863  T

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Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 8095453 - 8095675
Alignment:
Q  1 ttcaggaacattaaacttagtcagttcatgctttggcatttcaggtactttaggaatttcaggttttggcaattcaggaaccttaggttgctctagctta 100  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  8095453 ttcaggaacattaaacttaggcagttcatgctttggcatttcaggtactttaggaatttcaggttttggcaattcaggaaccttaggttgctctagttta 8095552  T
Q  101 ggtgactcggggattttaggtagctcgggtttgggcaattcaggaacattaaacttgggtagttcaggttttggcaattcgggcaccttaggaatttcta 200  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8095553 ggtgattcgggaattttaggtagctcgggtttgggcaattcaggaacattaaacttgggtagttcaggttttggcaattccggcaccttaggaatttcta 8095652  T
Q  201 actttggcatttcaggtacgttt 223  Q
    |||||||||||||||||||||||    
T  8095653 actttggcatttcaggtacgttt 8095675  T

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Target: chr3; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 5 - 198
Target Start/End: Original strand, 8095319 - 8095512
Alignment:
Q  5 ggaacattaaacttagtcagttcatgctttggcatttcaggtactttaggaatttcaggttttggcaattcaggaaccttaggttgctctagcttaggtg 104  Q
    ||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||    
T  8095319 ggaacattaaacttaggtagttcaggctttggcatttcaggtactttaggaatttcaggttttgtcaattcaggaaccttaggttgctctaacttcggtg 8095418  T
Q  105 actcggggattttaggtagctcgggtttgggcaattcaggaacattaaacttgggtagttcaggttttggcaattcgggcaccttaggaatttc 198  Q
    | || |||||||||||||| |||||||| | ||||||||||||||||||||| || |||||| | ||||||| ||| || || |||||||||||    
T  8095419 attcagggattttaggtagttcgggttttgtcaattcaggaacattaaacttaggcagttcatgctttggcatttcaggtactttaggaatttc 8095512  T

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Target: chr3; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 5 - 198
Target Start/End: Original strand, 8111507 - 8111700
Alignment:
Q  5 ggaacattaaacttagtcagttcatgctttggcatttcaggtactttaggaatttcaggttttggcaattcaggaaccttaggttgctctagcttaggtg 104  Q
    |||| |||||||||||  |||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||    
T  8111507 ggaatattaaacttaggtagttcaggctttgacatttcaggtactttaggaatttcaggttttgtcaattcaggaaccttaggttgctctaacttcggtg 8111606  T
Q  105 actcggggattttaggtagctcgggtttgggcaattcaggaacattaaacttgggtagttcaggttttggcaattcgggcaccttaggaatttc 198  Q
    | || |||||||||||||| |||||||| | ||||||||||||||||||||| || |||||| | ||||||| ||| || || |||||||||||    
T  8111607 attcagggattttaggtagttcgggttttgtcaattcaggaacattaaacttaggcagttcatgctttggcatttcaggtactttaggaatttc 8111700  T

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Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 44 - 146
Target Start/End: Original strand, 8111144 - 8111246
Alignment:
Q  44 ggtactttaggaatttcaggttttggcaattcaggaaccttaggttgctctagcttaggtgactcggggattttaggtagctcgggtttgggcaattcag 143  Q
    |||||||||||||| || ||||||| |||||||||||||||||| |||||||| |||||| ||||||||| |||||| || | |||||| |||| ||| |    
T  8111144 ggtactttaggaatctcgggttttgtcaattcaggaaccttaggctgctctagtttaggtaactcggggactttagggaggttgggttttggcatttcgg 8111243  T
Q  144 gaa 146  Q
    |||    
T  8111244 gaa 8111246  T

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Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 8041261 - 8041185
Alignment:
Q  119 ggtagctcgggtttgggcaattcaggaacattaaacttgggtagttcaggttttggcaattcgggcaccttaggaat 195  Q
    |||| ||||||||| ||||||||||| |||||||| || ||||||||||||||||||||||| || |||||||||||    
T  8041261 ggtaactcgggttttggcaattcagggacattaaatttaggtagttcaggttttggcaattcaggtaccttaggaat 8041185  T

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Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 8094956 - 8095032
Alignment:
Q  44 ggtactttaggaatttcaggttttggcaattcaggaaccttaggttgctctagcttaggtgactcggggattttagg 120  Q
    |||||||||||||| || ||||||| |||||||||||||||||| |||||||| |||||| ||||||||| ||||||    
T  8094956 ggtactttaggaatctcgggttttgtcaattcaggaaccttaggctgctctagtttaggtaactcggggactttagg 8095032  T

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Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 97 - 198
Target Start/End: Original strand, 8095273 - 8095374
Alignment:
Q  97 cttaggtgactcggggattttaggtagctcgggtttgggcaattcaggaacattaaacttgggtagttcaggttttggcaattcgggcaccttaggaatt 196  Q
    ||||||| |||| |||  |||||| ||||||||||| || ||||| |||||||||||||| ||||||||||| ||||||| ||| || || |||||||||    
T  8095273 cttaggtaactcaggggctttaggaagctcgggtttcggaaattcgggaacattaaacttaggtagttcaggctttggcatttcaggtactttaggaatt 8095372  T
Q  197 tc 198  Q
    ||    
T  8095373 tc 8095374  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 147
Target Start/End: Original strand, 8094905 - 8094993
Alignment:
Q  59 tcaggttttggcaattcaggaaccttaggttgctctagcttaggtgactcggggattttaggtagctcgggtttgggcaattcaggaac 147  Q
    ||||||||||| |||||||||||||||||    |||||||||||| |||| || | |||||| | ||||||||| | ||||||||||||    
T  8094905 tcaggttttggaaattcaggaaccttaggcaattctagcttaggtaactctggtactttaggaatctcgggttttgtcaattcaggaac 8094993  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 219
Target Start/End: Complemental strand, 8041049 - 8040954
Alignment:
Q  124 ctcgggtttgggcaattcaggaacattaaacttgggtagttcaggttttggcaattcgggcaccttaggaatttctaactttggcatttcaggtac 219  Q
    ||||||||| ||| ||||||||||||||||||| ||||| ||||| ||||| | ||| || |||||||| | ||||  |||||||| |||| ||||    
T  8041049 ctcgggttttggccattcaggaacattaaacttaggtagctcaggctttggaagttcaggtaccttaggtaattctggctttggcaattcatgtac 8040954  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 8041241 - 8041098
Alignment:
Q  1 ttcaggaacattaaacttagtcagttcatgctttggcatttcaggtactttaggaatttcaggttttggcaattcaggaaccttaggttgctctagctta 100  Q
    |||||| |||||||| ||||  |||||| | ||||||| ||||||||| |||||||| |  || || ||||| ||||| || |||||| |||| || ||     
T  8041241 ttcagggacattaaatttaggtagttcaggttttggcaattcaggtaccttaggaatatatggcttgggcaactcagggactttaggtagctcaagtttt 8041142  T
Q  101 ggtgactcggggattttaggtagctcgggtttgggcaattcagg 144  Q
    ||  | || |||| ||||||||||||| |||| |||||||||||    
T  8041141 ggcaattcagggactttaggtagctcgagttttggcaattcagg 8041098  T

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Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 198
Target Start/End: Original strand, 8111479 - 8111562
Alignment:
Q  115 tttaggtagctcgggtttgggcaattcaggaacattaaacttgggtagttcaggttttggcaattcgggcaccttaggaatttc 198  Q
    |||||| ||||| ||||| |||||||| |||| ||||||||| ||||||||||| |||| || ||| || || |||||||||||    
T  8111479 tttaggaagctcaggtttcggcaattcgggaatattaaacttaggtagttcaggctttgacatttcaggtactttaggaatttc 8111562  T

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Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 8041034 - 8040948
Alignment:
Q  1 ttcaggaacattaaacttagtcagttcatgctttggcatttcaggtactttaggaatttcaggttttggcaattcaggaaccttagg 87  Q
    ||||||||||||||||||||  || ||| ||||||| | ||||||||| ||||| | ||| || |||||||||||| | ||||||||    
T  8041034 ttcaggaacattaaacttaggtagctcaggctttggaagttcaggtaccttaggtaattctggctttggcaattcatgtaccttagg 8040948  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 8071962 - 8071894
Alignment:
Q  124 ctcgggtttgggcaattcaggaacattaaacttgggtagttcaggttttggcaattcgggcaccttagg 192  Q
    |||| |||| ||||||||||||||||||||||| ||||| ||||| ||||| | ||| || ||||||||    
T  8071962 ctcgagttttggcaattcaggaacattaaacttaggtagctcaggctttggaagttcaggtaccttagg 8071894  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 180
Target Start/End: Complemental strand, 8072420 - 8072350
Alignment:
Q  110 gggattttaggtagctcgggtttgggcaattcaggaacattaaacttgggtagttcaggttttggcaattc 180  Q
    |||| |||||||| ||||||||| || | |||||| ||||| || || |||||||||||||||| ||||||    
T  8072420 gggactttaggtaactcgggttttggtagttcagggacattgaatttcggtagttcaggttttgccaattc 8072350  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 8111842 - 8111898
Alignment:
Q  31 ctttggcatttcaggtactttaggaatttcaggttttggcaattcaggaaccttagg 87  Q
    |||||||||||||||||| || || |  |||||||||||||| |||||||| |||||    
T  8111842 ctttggcatttcaggtacgtttggtaaatcaggttttggcaactcaggaacattagg 8111898  T

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