View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_low_9 (Length: 564)
Name: NF12891_low_9
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_low_9 |
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| [»] scaffold0244 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 5e-79; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 22076260 - 22076095
Alignment:
| Q |
19 |
gcaatattaaaatgcggcaaagtttcaaataaaatagtgataaatgcaaatgaatcacatttttgctttgttttcaatgacattgcattggaattcaatt |
118 |
Q |
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| T |
22076260 |
gcaatattaaaatgcggcaaagtttaaattaaaatagtgataaatgcaaatgaatcacatttttgctttgttttcaatgaaattgcattggaattcaatt |
22076161 |
T |
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| Q |
119 |
gcactgcacatttgaaaagacaaaagtaataattttagaaactagacttattgaatttaatcacat |
184 |
Q |
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| T |
22076160 |
gcactgcacatttgaaaagacaaaagtaataattttagaaactagacttattgaatgtaatcacat |
22076095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 35 - 183
Target Start/End: Complemental strand, 22065023 - 22064874
Alignment:
| Q |
35 |
gcaaagtttcaaataaaatagtgataaatgcaaatgaatcacatttttgctttgttttcaatga---cattgcattggaattcaattgcactgcacattt |
131 |
Q |
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| T |
22065023 |
gcaaagttttaaa-aatatagagataaacgcaaatgaatcacatttt-gctttgttttcaataataacattgcattggtattgaattgcacagcacgttt |
22064926 |
T |
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| Q |
132 |
gaaaagacaaaagtaataattttagaaactagacttattgaatttaatcaca |
183 |
Q |
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| T |
22064925 |
gagacgacacaaataataatattagaaactagaattgttgaatgttatcaca |
22064874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 22056996 - 22056910
Alignment:
| Q |
20 |
caatattaaaatgcggcaaagtttcaaataaaatagtgataaatgcaaatgaatcacatttttgctttgttttcaatgacattgcatt |
107 |
Q |
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| T |
22056996 |
caatatcaaattgcagcaaagttttcaa-aaattagtaataaatacaaatgaatcacatttttgctttgttttccatcacattgcatt |
22056910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 251 - 317
Target Start/End: Complemental strand, 22070929 - 22070858
Alignment:
| Q |
251 |
tatttataaagtatatatgtt-----gttttgacacttaacagttttgaacaaaaattatatccacgtgata |
317 |
Q |
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| T |
22070929 |
tatttataaagtatatatgttttgttgttttaacaggtaacagttttgaacaaaaattatatccacgtgata |
22070858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 310 - 348
Target Start/End: Complemental strand, 22070144 - 22070106
Alignment:
| Q |
310 |
acgtgatattaactatatagtataaatcataaactttaa |
348 |
Q |
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| T |
22070144 |
acgtgatattaactatatagtataaatcataaactttaa |
22070106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 517 - 554
Target Start/End: Complemental strand, 22069933 - 22069896
Alignment:
| Q |
517 |
caaaatttgaaaactagctgacaatgtggccgcctttg |
554 |
Q |
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| T |
22069933 |
caaaatttggaaactagctgacaatgtggccgcctttg |
22069896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 513 - 556
Target Start/End: Original strand, 17058779 - 17058822
Alignment:
| Q |
513 |
tgaccaaaatttgaaaactagctgacaatgtggccgcctttgct |
556 |
Q |
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| T |
17058779 |
tgaccaaaatttggaaactagctgacaatgtggtcgcctttgct |
17058822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0244 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0244
Description:
Target: scaffold0244; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 107
Target Start/End: Original strand, 6186 - 6233
Alignment:
| Q |
60 |
aaatgcaaatgaatcacatttttgctttgttttcaatgacattgcatt |
107 |
Q |
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| T |
6186 |
aaatgcaaatgattcacatttttgctttgctttccatcacattgcatt |
6233 |
T |
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