View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_low_91 (Length: 237)
Name: NF12891_low_91
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_low_91 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 8111475 - 8111250
Alignment:
| Q |
1 |
cctgaattacctaactcggaggttcctaaggttcccgaacttcaaaaacacgagcttcctaaagcccctgagatacatgaaccaaggctatctaaagtgt |
100 |
Q |
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| T |
8111475 |
cctgaattacctaagtcggaggttcctaaggttcccgaacttcaaaaacacgagtttcctaaagcccctgagttacatgaaccaaggctatctaaagttt |
8111376 |
T |
|
| Q |
101 |
ccgaattgccaaaacctgaattgcctaaaatccctgagttacctaagccacaattacctaaaactcctgaattgacaaaacctgagtttcctaaagttcc |
200 |
Q |
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| T |
8111375 |
ccgaattgccaaaacctgaattgcccaaaatccctgagttacctaagccacaattacctaaaactcctgaattgacaaaacccgagtttcctaaagttcc |
8111276 |
T |
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| Q |
201 |
tgaattacctaaacctgagttgccta |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
8111275 |
tgaattacctaaacctgagttgccta |
8111250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 8095287 - 8095062
Alignment:
| Q |
1 |
cctgaattacctaactcggaggttcctaaggttcccgaacttcaaaaacacgagcttcctaaagcccctgagatacatgaaccaaggctatctaaagtgt |
100 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
8095287 |
cctgagttacctaagtcggaggttcctaaggttcccgaacttcaaaaacacgagcttcctaaagcccctgagttacatgaaccaaggctatctaaagttt |
8095188 |
T |
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| Q |
101 |
ccgaattgccaaaacctgaattgcctaaaatccctgagttacctaagccacaattacctaaaactcctgaattgacaaaacctgagtttcctaaagttcc |
200 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
8095187 |
tcgaattgccaaaacctgaattgtccaaaatccctgagttacctaagcctcaattacctaaaactcatgaattgacaaaacctgagtttcctaaagttcc |
8095088 |
T |
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| Q |
201 |
tgaattacctaaacctgagttgccta |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
8095087 |
tgaattacctaaacctgagttgccta |
8095062 |
T |
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Back To:
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