View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_low_95 (Length: 227)
Name: NF12891_low_95
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_low_95 |
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| [»] chr5 (1 HSPs) |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 11908767 - 11908541
Alignment:
| Q |
1 |
gtgtttaacagatagaatgtacttgaagaaatttacagaggagttcatatggatatggatagtgaagctgttagacagattttgaccagcctcatagaat |
100 |
Q |
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| T |
11908767 |
gtgtttaaaagatagaatgtacttgaagaaatttacagaggagttcatatggatatggatagtgaagctgttagacagattctgaccagcctcatagaat |
11908668 |
T |
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| Q |
101 |
ctggtacataaacaatgcctaaagtgttactgaannnnnnncttgaaatttcaacgtggctacttataaatgtacctttagattccattttattccctct |
200 |
Q |
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| T |
11908667 |
ctggtacataaacaatgcctgaagtgttgctgaatttttttcttgaaatttcaacgtggctacttataaatgtacctttagattccattttattccctct |
11908568 |
T |
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| Q |
201 |
taaataccctatggatctgatgttaca |
227 |
Q |
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| T |
11908567 |
taaataccctatggatctgatgttaca |
11908541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 119; Significance: 6e-61; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 15580101 - 15579874
Alignment:
| Q |
1 |
gtgtttaacagatagaatgtacttgaagaaatttacagaggagttcatatggatatggatagtgaagctgttagacagattttgaccagcctcatagaat |
100 |
Q |
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|||||||| ||| |||||| |||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||| | |||||||||||| ||||| |
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| T |
15580101 |
gtgtttaaaagacagaatgaacttgaagaaatatacagaggagttcacatggatatggatagtgaagctgctagacagactctgaccagcctcacagaat |
15580002 |
T |
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| Q |
101 |
ctggtacat-aaacaatgcctaaagtgttactgaannnnnnncttgaaatttcaacgtggctacttataaatgtacctttagattccattttattccctc |
199 |
Q |
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| T |
15580001 |
ctggtacataaaattatgcctaaagtgtcattgaatttttttcttgaaatttcaatgtggctacttataaatttacctttagattccattttcttccctc |
15579902 |
T |
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| Q |
200 |
ttaaataccctatggatctgatgttaca |
227 |
Q |
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| T |
15579901 |
tgaaatactctctggacctgatgttaca |
15579874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 12050226 - 12050450
Alignment:
| Q |
1 |
gtgtttaacagatagaatgtacttgaagaaatttacagaggagttcatatggatatggatagtgaagctgttagacagattttgaccagcctcatagaat |
100 |
Q |
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|||||||| ||| | |||| ||||||| ||||||||| ||||| ||| |||||||||||||||||||||| |||||||||| ||| || |||||||||| |
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| T |
12050226 |
gtgtttaaaagacacaatgaacttgaacaaatttacaaaggagatcacatggatatggatagtgaagctg-tagacagattctgatcaatctcatagaat |
12050324 |
T |
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| Q |
101 |
ctggtacataaacaatgcctaaagtgttactgaa-nnnnnnncttgaaatttcaacgtggctacttataaatgtacctttagattccattttattccctc |
199 |
Q |
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| T |
12050325 |
ctggtacataaataatgcctaaggtgttattgaattttttttcttgatatttcaacatggctacttataaatgtatctgtagattccattttattccctc |
12050424 |
T |
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| Q |
200 |
ttaaataccctatggatctgatgtta |
225 |
Q |
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| T |
12050425 |
ttaaataccctctggacctgatgtta |
12050450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 207
Target Start/End: Original strand, 8334666 - 8334865
Alignment:
| Q |
3 |
gtttaacagatagaatgtacttgaagaaatttacagaggagttcatatggatatggatagtgaagctgttagacagattttgaccagcctcatagaatct |
102 |
Q |
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|||||| ||| |||||| ||||||||||||| | ||||||| || |||||||||||| | |||||| |||||||||| ||||| |||||||| |
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| T |
8334666 |
gtttaaaagacagaatgaacttgaagaaattcatagaggagcacacatggatatggatgctaaagctgctagacagattctgaccgacctcatag----- |
8334760 |
T |
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| Q |
103 |
ggtacataaacaatgcctaaagtgttactgaannnnnnn-cttgaaatttcaacgtggctacttataaatgtacctttagattccattttattccctctt |
201 |
Q |
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|||||||||| || ||| ||||||| |||| |||||||||| ||||||||||| || ||||||||| |||| |||| |||| ||||||||| |
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| T |
8334761 |
-gtacataaactatccctgaagtgttgttgaattttttttcttgaaatttaaacgtggctacgtacaaatgtaccattagcttccgttttcttccctctt |
8334859 |
T |
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