View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_low_97 (Length: 226)
Name: NF12891_low_97
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_low_97 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 31 - 226
Target Start/End: Original strand, 17303517 - 17303712
Alignment:
| Q |
31 |
aaacctgaaatgataatgaccaagaccatgtttaacgccccatttaaactctccaacatatctactcccatcttcacaagtatgaacaccgcacccatga |
130 |
Q |
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| T |
17303517 |
aaacctgaaatgataatgaccaaggccatgtttaacaccccatttaaattctccaacatatctactcccatcttcacaagtatgaacaccgcacccatga |
17303616 |
T |
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| Q |
131 |
ctctgtccattagaccattctccagtataaacatccccagtctaaaacctataaacaccaaacccatgtctcaatccttgtcgatattgacctcta |
226 |
Q |
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| T |
17303617 |
ctctgtccattagaccattctccagtataaacatccccagtataaaacctataaacaccaaacccatgtctcaatccttgtcgatattgccctcta |
17303712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 41 - 207
Target Start/End: Original strand, 1586796 - 1586962
Alignment:
| Q |
41 |
tgataatgaccaagaccatgtttaacgccccatttaaactctccaacatatctactcccatcttcacaagtatgaacaccgcacccatgactctgtccat |
140 |
Q |
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| T |
1586796 |
tgatagtggccaagaccatgtttaacaccccacttaaactctccaacaaatctactcccatcatcacaagtatgaacaccactaccatgactctgtccat |
1586895 |
T |
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| Q |
141 |
tagaccattctccagtataaacatccccagtctaaaacctataaacaccaaacccatgtctcaatcc |
207 |
Q |
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| T |
1586896 |
tcaaccattcaccagcataaacatctccagtataaaatctataaacaccaaacccatttctcaatcc |
1586962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 49 - 211
Target Start/End: Original strand, 24238788 - 24238950
Alignment:
| Q |
49 |
accaagaccatgtttaacgccccatttaaactctccaacatatctactcccatcttcacaagtatgaacaccgcacccatgactctgtccattagaccat |
148 |
Q |
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| T |
24238788 |
accaagaccatgtttagaaccaaacttaaattcaccaacataacaactcccatcagaacaagattgaacaccaaaaccatgactctgtccattaaaccat |
24238887 |
T |
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| Q |
149 |
tctccagtataaacatccccagtctaaaacctataaacaccaaacccatgtctcaatccttgt |
211 |
Q |
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| T |
24238888 |
tccccagaataacaatcaccagtataaaatctataaacaccataaccatgtctcaaaccttgt |
24238950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 165
Target Start/End: Original strand, 41090116 - 41090225
Alignment:
| Q |
56 |
ccatgtttaacgccccatttaaactctccaacatatctactcccatcttcacaagtatgaacaccgcacccatgactctgtccattagaccattctccag |
155 |
Q |
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| T |
41090116 |
ccatgtttaacaccccatttaaattccccaacataatggctcccatcattgcaagtatgaactccaaacccatgacactgaccattacaccattcaccag |
41090215 |
T |
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| Q |
156 |
tataaacatc |
165 |
Q |
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| T |
41090216 |
tatagacatc |
41090225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 222
Target Start/End: Original strand, 32693598 - 32693695
Alignment:
| Q |
125 |
ccatgactctgtccattagaccattctccagtataaacatccccagtctaaaacctataaacaccaaacccatgtctcaatccttgtcgatattgacc |
222 |
Q |
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| T |
32693598 |
ccatgactttgaccattacaccattcaccagaaaaagaatcaccagtatagaacctataaacaccataaccatgtctcattccttttctatactgacc |
32693695 |
T |
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