View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_low_99 (Length: 223)
Name: NF12891_low_99
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_low_99 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 2320417 - 2320232
Alignment:
| Q |
17 |
gagaagatggctgagttttgaacgagaacatggtgagccagagcatggtcgttgatgaaaatggaaggtcgagaaccgatatggacagtgatgataggac |
116 |
Q |
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| T |
2320417 |
gagaagatggctgagttttgaacgagaacatggtgagccagagcatggtcgttgatgaaaatggaaggtcgagaaccgatatggacagtgatgataggac |
2320318 |
T |
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| Q |
117 |
catgtttagcatggagagttttgagaaaaggttcaagttgggagattgatttttggagcaattggaactttgtgatgatggggatg |
202 |
Q |
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| T |
2320317 |
catgtttggcatggagagttttgagaaaaggttcaagttgggagattgatttttggagcaattggaagtttgtgatgatggggatg |
2320232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 2293099 - 2292912
Alignment:
| Q |
15 |
cagagaagatggctgagttttgaacgagaacatggtgagccagagcatggtcgttgatgaaaatggaaggtcgagaaccgatatggacagtgatgatagg |
114 |
Q |
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| T |
2293099 |
cagagaagatggatgagttttgaacgagaacatggtgggccagagtatggtcgttaatgaaaatggaaggtcgagaaccgatatggacagtgatgatagg |
2293000 |
T |
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| Q |
115 |
accatgtttagcatggagagttttgagaaaaggttcaagttgggagattgatttttggagcaattggaactttgtgatgatggggatg |
202 |
Q |
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| T |
2292999 |
accatgtttggcatggagagttttgagaaaaggttcaagttgggagattgatttttggagcaattggaagtttgtgatgatggggatg |
2292912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 23 - 202
Target Start/End: Complemental strand, 2309422 - 2309243
Alignment:
| Q |
23 |
atggctgagttttgaacgagaacatggtgagccagagcatggtcgttgatgaaaatggaaggtcgagaaccgatatggacagtgatgataggaccatgtt |
122 |
Q |
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| T |
2309422 |
atggctgagttttgaacgagaacatggtgagccagagcatggtcgttgatgaaaatggaaggttgagaaccgatatggacaatgatgataggaccatgtt |
2309323 |
T |
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| Q |
123 |
tagcatggagagttttgagaaaaggttcaagttgggagattgatttttggagcaattggaactttgtgatgatggggatg |
202 |
Q |
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| T |
2309322 |
tggcatggagagttttgagaaaaggttcaagttgggagattgatttttggagcaattggaagtttgtgatgatggggatg |
2309243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 2302718 - 2302531
Alignment:
| Q |
15 |
cagagaagatggctgagttttgaacgagaacatggtgagccagagcatggtcgttgatgaaaatggaaggtcgagaaccgatatggacagtgatgatagg |
114 |
Q |
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||||| ||||| ||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
2302718 |
cagagtagatgtctgagttttgaacgagaacatggtgggccagagcatggtcatcgatgaaaatggaaggtcgagaaccgatgtggagagtgatgatagg |
2302619 |
T |
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| Q |
115 |
accatgtttagcatggagagttttgagaaaaggttcaagttgggagattgatttttggagcaattggaactttgtgatgatggggatg |
202 |
Q |
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| T |
2302618 |
accatgtttggcatggagagttttgagaaaaggttcaagttgggaggatggttttcggagcaactgaatgtttgtgaggatggggatg |
2302531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 15 - 195
Target Start/End: Complemental strand, 2329988 - 2329808
Alignment:
| Q |
15 |
cagagaagatggctgagttttgaacgagaacatggtgagccagagcatggtcgttgatgaaaatggaaggtcgagaaccgatatggacagtgatgatagg |
114 |
Q |
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||||||||| || ||||||||||||||| | ||||| ||||||||| ||||| ||||||||||||||||||||||||||||| | | |||||||||| |
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| T |
2329988 |
cagagaagacggaggagttttgaacgagagcgtggtgggccagagcacggtcggcgatgaaaatggaaggtcgagaaccgatattaagattgatgatagg |
2329889 |
T |
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| Q |
115 |
accatgtttagcatggagagttttgagaaaaggttcaagttgggagattgatttttggagcaattggaactttgtgatgat |
195 |
Q |
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||||||||| ||||| |||||| |||||||||||||||| |||| || ||||||| | ||| |||||| |||||||||| |
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| T |
2329888 |
accatgtttggcatgaagagttctgagaaaaggttcaagctgggcgaatgattttcgaagccattggatgcttgtgatgat |
2329808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 32 - 202
Target Start/End: Complemental strand, 2326256 - 2326086
Alignment:
| Q |
32 |
ttttgaacgagaacatggtgagccagagcatggtcgttgatgaaaatggaaggtcgagaaccgatatggacagtgatgataggaccatgtttagcatgga |
131 |
Q |
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| T |
2326256 |
ttttgaacgagggcgtggtgggccagagcacggtcggagatgtaaatggaaggtctggagccgatattaagattgatgataggaccatgtttggcatgga |
2326157 |
T |
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| Q |
132 |
gagttttgagaaaaggttcaagttgggagattgatttttggagcaattggaactttgtgatgatggggatg |
202 |
Q |
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|||||||||||||||||||||||||||| | ||||||| ||||| |||| | ||||||||||||||||| |
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| T |
2326156 |
gagttttgagaaaaggttcaagttgggaaaatgattttcggagccattgtatgcttgtgatgatggggatg |
2326086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 2350288 - 2350102
Alignment:
| Q |
15 |
cagagaagatggctgagttttgaacgagaacatggtgagccagagcatggtcgttgatgaaaatggaaggtcgagaaccgatatggacagtgatgatagg |
114 |
Q |
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||||||||||||||||||||||||||||| | ||||| || |||| ||||||| |||||||||||||||||| ||| ||| | || |||||||||||| |
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| T |
2350288 |
cagagaagatggctgagttttgaacgagagcgtggtgggcgagagtatggtcggagatgaaaatggaaggtcggtaactgattttgagagtgatgatagg |
2350189 |
T |
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| Q |
115 |
accatgtttagcatggagagttttgagaaaaggttcaagttgggagattgatttttggagcaattggaactttgtgatgatggggat |
201 |
Q |
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| T |
2350188 |
accatatttggtgtggagggttttgataaaaggttcgagttgggacgatgattttcggagccataggatacttgtgataatggggat |
2350102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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