View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12892_high_2 (Length: 418)
Name: NF12892_high_2
Description: NF12892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12892_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 14 - 406
Target Start/End: Original strand, 54879223 - 54879626
Alignment:
| Q |
14 |
acttttccattcttgcactttccaatttgagctataaatatt-gttaatgtatacgtacctcactagtacccaattacatctcaccaactaagtgcaatg |
112 |
Q |
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| T |
54879223 |
acttttccattcttgcactttccaatttgagctataaatatttgttaatgtatacgtacctcactagtacccaattacatctgaccaactaagtgcaatg |
54879322 |
T |
|
| Q |
113 |
caacaaacacgtttatatgtcatcaatctataaaagaattatttttaatgcatcagcaataaagattaaaagtttgacacggtggcttgtgggatcatta |
212 |
Q |
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| T |
54879323 |
caacaaacacgtttatatgtcatcaatctataaaagaattatttttaatgcatcagcaataaagattaaaagtttgacacggtggcttgtgggatcatta |
54879422 |
T |
|
| Q |
213 |
gcatatgattacaactgcgtttaggtgcaaat-------agatatgacacactatagttaataagtggttcatcttgtaagggcgcagtcaaacgtgatt |
305 |
Q |
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| T |
54879423 |
gcatatgattacaattgcgtttaggtgcaaattatattaagatatgacacactatagttaataagtggttcatcttgtaagggcgcagtcaaacgtgatt |
54879522 |
T |
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| Q |
306 |
agctgggacaaccacatcttagtttta-ttttttagacttct--tcgagttgtaccttgctgtaggcacatctcgattagatcaacagttctagactttc |
402 |
Q |
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| T |
54879523 |
agctgggacaaccacatcttagttttatttttttagacttcttctcgagttgtatcttgcagtaggcacatctcgattagatcaacagttctagactttt |
54879622 |
T |
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| Q |
403 |
agtg |
406 |
Q |
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| T |
54879623 |
agtg |
54879626 |
T |
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