View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12892_low_1 (Length: 576)
Name: NF12892_low_1
Description: NF12892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12892_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 226 - 557
Target Start/End: Original strand, 8101456 - 8101788
Alignment:
| Q |
226 |
atcctaaatttagaaattatttattcaaaaaatcaaatgttacaaattccaacgaaagaaatacacatattttcataaatatatacttttaaaaatcctt |
325 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8101456 |
atcctaaatttagaaattattcattcaaaaaatcaaatgttacaaatttcaacaaaagaaatacacatattttcataaatatatacttttaaaaatcttt |
8101555 |
T |
|
| Q |
326 |
aaagagtatcagaaaggcagtcgttagtatttttcttcaaacaaaa-gctcataactgagtcttcacaaaatccaaaatgcaactaattatgtgattgga |
424 |
Q |
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||||||| ||||||||||||| |||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8101556 |
aaagagtgtcagaaaggcagttgttaatattttccttcaaacaaaaagctcataactgagtcttcacaaaatccaaaatgcaactaattatgtgattgga |
8101655 |
T |
|
| Q |
425 |
tcctatgcttgtgagtcttgggttttagttggagcacgtgatcctcgagctataacagtttttcccttagcagtacagaaaatacagcaatgaaatgcag |
524 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
8101656 |
tcctatgcttttgagtcttgggttttagttggagcacgtgatcctcgagctataacagttttttccttagcagtacagaaaatacagcaatgaagtgcag |
8101755 |
T |
|
| Q |
525 |
attaagcaatctcagtcaatatcaggagcttct |
557 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
8101756 |
attaagcaatctcaatcaatatcaggagcttct |
8101788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 8100065 - 8100131
Alignment:
| Q |
18 |
gtttcgagatgtgcccataccttagttctacatttcttacaacgtatagctctaaaactcgtgttta |
84 |
Q |
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| T |
8100065 |
gtttcgagatgtgcccataccttagttctacatttcttacaacgtatagctctacaactcgtgttta |
8100131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 8100475 - 8100524
Alignment:
| Q |
148 |
caaacaacaactcagacattttaaaagcaaacatatacggtgtcaatcaa |
197 |
Q |
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|||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
8100475 |
caaacaacaactcaaacattttaaaagcaaacatttacggtgtcaatcaa |
8100524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 226 - 277
Target Start/End: Original strand, 815003 - 815054
Alignment:
| Q |
226 |
atcctaaatttagaaattatttattcaaaaaatcaaatgttacaaattccaa |
277 |
Q |
| |
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|||| ||||||||||||||||| || |||||||||||||| ||||||||||| |
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| T |
815003 |
atcccaaatttagaaattattttttaaaaaaatcaaatgtcacaaattccaa |
815054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 330
Target Start/End: Original strand, 41583550 - 41583654
Alignment:
| Q |
226 |
atcctaaatttagaaattatttattcaaaaaatcaaatgttacaaattccaacgaaagaaatacacatattttcataaatatatacttttaaaaatcctt |
325 |
Q |
| |
|
|||| |||||||||||||||| |||||||| | |||| ||||||||||||| | | |||||||| ||||||||||| || |||| || || || ||| |
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|
| T |
41583550 |
atcccaaatttagaaattattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactattgaagattctt |
41583649 |
T |
|
| Q |
326 |
aaaga |
330 |
Q |
| |
|
||||| |
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|
| T |
41583650 |
aaaga |
41583654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 231 - 273
Target Start/End: Complemental strand, 7574273 - 7574231
Alignment:
| Q |
231 |
aaatttagaaattatttattcaaaaaatcaaatgttacaaatt |
273 |
Q |
| |
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||||||||||| ||||| || |||||||||||||||||||||| |
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| T |
7574273 |
aaatttagaaaatatttcttaaaaaaatcaaatgttacaaatt |
7574231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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