View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12892_low_3 (Length: 312)
Name: NF12892_low_3
Description: NF12892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12892_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 42 - 306
Target Start/End: Original strand, 28129497 - 28129761
Alignment:
| Q |
42 |
gtaaccatgtaattggggcatacacaccagcttttgtcgatgattaatctctgtagtggattctctccactcaacatgttttcattcagagcgttcaaac |
141 |
Q |
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| T |
28129497 |
gtaaccatgtaattggggcatacacaccagcttttgtcgatgattaaactctgtagtggattctctccactcaacatgttttcattcagagcgttcaaac |
28129596 |
T |
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| Q |
142 |
ccgagactttattttagagattaagagagagtgaagtgatgagtactaaccaatgcaaatccacctctagcgcaccaagtttttggcatggtggtagaac |
241 |
Q |
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| T |
28129597 |
ccgagactttattttagagattaagagagagtgaagtgatgagtactaaccaatgcaaatccacctctagcgcaccaagtttttggcatggtggtagaac |
28129696 |
T |
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| Q |
242 |
gagcgccataccactctgggagactagttttccccagaataatggcaccagcatccctttgcttc |
306 |
Q |
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| T |
28129697 |
gagcgccataccactctgggagactagttttccccagaataatggcaccagcatcccttagcttc |
28129761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 163 - 306
Target Start/End: Original strand, 28114076 - 28114226
Alignment:
| Q |
163 |
taagagagagtga-agtgatgagtacta---accaatgcaaatccacctctagcgcaccaagtttttg---gcatggtggtagaacgagcgccataccac |
255 |
Q |
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| T |
28114076 |
taagagagagtgatagtgatgagtactactaaccaagccaaatccacctctagggcaccaagcttgtcctagcatttttgaagaacgaatcccataccac |
28114175 |
T |
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| Q |
256 |
tctgggagactagttttccccagaataatggcaccagcatccctttgcttc |
306 |
Q |
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| T |
28114176 |
tctggaagactagttttccccagaatgatagcaccagcatcccttagcttc |
28114226 |
T |
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