View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12892_low_4 (Length: 223)
Name: NF12892_low_4
Description: NF12892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12892_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 13 - 210
Target Start/End: Original strand, 4750588 - 4750785
Alignment:
| Q |
13 |
caaagggaaagatgctttacataaacacgcaacttgtttggcagttttatcaaacgaggcattaacatgtgattctacatcctacccctacccttatcca |
112 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4750588 |
caaagggaaagatgctttacataaacatgcaacttgtttggcagttttatcaaatgaggcattaacatgtgattctacatcctacccctacccttaccca |
4750687 |
T |
|
| Q |
113 |
tttttataaacatctcaaagcggcctcccttccacccccaactctggtggattttaaacatccaaacaaagagaaagaaaccaaacctctcatgatgt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4750688 |
tttttataaacatctcaaagcggcctcccttccgcccccaactttggtggattttaaacatccaaacaaagagaaagaaaccaaacctctcattatgt |
4750785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 13 - 210
Target Start/End: Original strand, 4750794 - 4750991
Alignment:
| Q |
13 |
caaagggaaagatgctttacataaacacgcaacttgtttggcagttttatcaaacgaggcattaacatgtgattctacatcctacccctacccttatcca |
112 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4750794 |
caaagcgaaagatgctttacataaacatgcaacttgtttggcagttttatcaaatgaggcattaacatgtgattctacatcctacccctacccttaccca |
4750893 |
T |
|
| Q |
113 |
tttttataaacatctcaaagcggcctcccttccacccccaactctggtggattttaaacatccaaacaaagagaaagaaaccaaacctctcatgatgt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4750894 |
tttttataaacatctcaaagcggcctcccttccgcccccaactctggtggattttaaacatccaaacaaagagaaagaaaccaaacctctcattatgt |
4750991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 37 - 205
Target Start/End: Complemental strand, 51322911 - 51322743
Alignment:
| Q |
37 |
acacgcaacttgtttggcagttttatcaaacgaggcattaacatgtgattctacatcctacccctacccttatccatttttataaacatctcaaagcggc |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51322911 |
acacgcaacttgtttggcagttttatcaaatgtggcattaagatgtgattctacatcctacccctacccttatccatttttataaacatctcaaagcggc |
51322812 |
T |
|
| Q |
137 |
ctcccttccacccccaactctggtggattttaaacatccaaacaaagagaaagaaaccaaacctctcat |
205 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51322811 |
ctcccttccgcccccaactctggtggattttaaacatccaaacaaagagaaagaaaccaaacctctcat |
51322743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University