View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12893_high_5 (Length: 274)
Name: NF12893_high_5
Description: NF12893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12893_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 12 - 257
Target Start/End: Complemental strand, 29145140 - 29144892
Alignment:
| Q |
12 |
cacagaacaaaaagggaagtgaagtgcatgggaaagagcaccatactta---ggtagattaatgaaataatttgcaaataaaatatagaattgaaaatga |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||| || ||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
29145140 |
cacagaacaaaaagggaagtgaagtgcatgggaaagagtactatatatactaggtagattaatgaaacaatttgcaaataaaatatagaattgaaaatga |
29145041 |
T |
|
| Q |
109 |
aatacctttcaaaatagagtgcaaagggagcaacacaaatagcagcaacaatatgtcgataagcaatgagtgcaaaaatgtaagtcccttgaaccaaaat |
208 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29145040 |
attacctttcaaaatagagtgcaaaaggagcaacacaaatagcagcaacaatatgtcgataagcaatgagtgcaaaaatgtaagtcccttgaaccaaaat |
29144941 |
T |
|
| Q |
209 |
gactcttgatagaagttgcatcccagttgcaaatatttgcactaataac |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29144940 |
gactcttgatagaagttgcatcccagttgcaaatatttgcactaataac |
29144892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 257
Target Start/End: Original strand, 29226833 - 29227081
Alignment:
| Q |
12 |
cacagaacaaaaagggaagtgaagtgcatgggaaagagcaccatactta---ggtagattaatgaaataatttgcaaataaaatatagaattgaaaatga |
108 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| || ||| || |||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
29226833 |
cacagaacaaaaagggaagtaaagtgcatgggaaagagtactatatatactaggtagattaatgcaacaatttgcaaataaaatatagaattgaaaatga |
29226932 |
T |
|
| Q |
109 |
aatacctttcaaaatagagtgcaaagggagcaacacaaatagcagcaacaatatgtcgataagcaatgagtgcaaaaatgtaagtcccttgaaccaaaat |
208 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29226933 |
attacctttcaaaatagagtgcaaaaggagcaacacaaatagcagcaacaatatgtcgataagcaatgagtgcaaaaatgtaagtcccttgaaccaaaat |
29227032 |
T |
|
| Q |
209 |
gactcttgatagaagttgcatcccagttgcaaatatttgcactaataac |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29227033 |
gactcttgatagaagttgcatcccagttgcaaatatttgcactaataac |
29227081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 112 - 257
Target Start/End: Original strand, 5306809 - 5306954
Alignment:
| Q |
112 |
acctttcaaaatagagtgcaaagggagcaacacaaatagcagcaacaatatgtcgataagcaatgagtgcaaaaatgtaagtcccttgaaccaaaatgac |
211 |
Q |
| |
|
||||||||||||| ||||||||||| || ||||||| |||||||||||| |||||||| ||| |||||||||||||| |||| || |||||||| ||||| |
|
|
| T |
5306809 |
acctttcaaaataaagtgcaaagggggcgacacaaacagcagcaacaatttgtcgatatgcattgagtgcaaaaatgaaagtgccctgaaccaagatgac |
5306908 |
T |
|
| Q |
212 |
tcttgatagaagttgcatcccagttgcaaatatttgcactaataac |
257 |
Q |
| |
|
||||||| |||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
5306909 |
ccttgataaaagttgtatcccagttccaaatatttgcactaataac |
5306954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University