View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12893_low_3 (Length: 323)
Name: NF12893_low_3
Description: NF12893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12893_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 53533128 - 53532819
Alignment:
| Q |
1 |
aaattgagattggattccctgcagtaataatatcgttacacagttacacgtaattatcaatctcaactattgatctgagatcaaacaattcatattacat |
100 |
Q |
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| T |
53533128 |
aaattgagattggattccctgcagtaataatatcgttacacagttacacgtaattatcaatctcaactattgatctgagatcaaacaattcatattacat |
53533029 |
T |
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| Q |
101 |
attcattgattagatattaacaaactcaaatgttgatttactccatgagttgggtgcacaaaaaactttaccatcttcaagttgcttcttgatcctctga |
200 |
Q |
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| T |
53533028 |
attcattgattagatattaacaaactcaaatgttgatttactccatgagttgggtgcacaaaaaactttaccatcttcaagttgcttcttgatcctctga |
53532929 |
T |
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| Q |
201 |
gctataatgatctacaaaatggatttgttaggttccagagaaattgacctgtctatgtattaacctttttggcttttgaacaacattttctaattgagaa |
300 |
Q |
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| T |
53532928 |
gctataatgatctacaaaatggatttgttaggttctagagaaattgacctgtctatgtattaacctttttggcttttgcacaacattttctaattgagaa |
53532829 |
T |
|
| Q |
301 |
gatggaaaac |
310 |
Q |
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| T |
53532828 |
gatggaaaac |
53532819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 140 - 211
Target Start/End: Original strand, 23214751 - 23214822
Alignment:
| Q |
140 |
actccatgagttgggtgcacaaaaaactttaccatcttcaagttgcttcttgatcctctgagctataatgat |
211 |
Q |
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| T |
23214751 |
actccatgagttgggtgcataaaaaacattaccatcttcaagttgcttcttgatcctctgagctatagtgat |
23214822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 20742614 - 20742678
Alignment:
| Q |
167 |
tttaccatcttcaagttgcttcttgatcctctgagctataatgatctacaaaatggatttgttag |
231 |
Q |
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| T |
20742614 |
tttaccatcttcaagttgtttcttgatcctctgagctatactgatctccaaaatgggtttgttag |
20742678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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