View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12894_high_4 (Length: 358)
Name: NF12894_high_4
Description: NF12894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12894_high_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 30 - 358
Target Start/End: Original strand, 14250973 - 14251299
Alignment:
| Q |
30 |
tcttcttactaattttgctcttgtacttatgccgatgcctttgtacttttgctagatgtcaatttatctctattgttgaaattgtttgatacattttaaa |
129 |
Q |
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| T |
14250973 |
tcttcttactaattttgctcttgtacttatgccgatgccgttgtacttttgctagatgtcaatttatctct--tgttgaaattgtttgatacattttaaa |
14251070 |
T |
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| Q |
130 |
tggcgatcatgtttgattagatttattgtgttttcttacatatgcagcttgtatatgataaggatacattttcaactgatgattttatgggcgaagctga |
229 |
Q |
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| T |
14251071 |
tggcgatcatgtttgattagatttattgtgttttcttacatatgcagcttgtatatgataaggatacattttcaactgatgattttatgggcgaagctga |
14251170 |
T |
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| Q |
230 |
aatagacattcaaccactagttttagctgcaattgcatacgagaaatctacggccaacgagtccgtgcagctagagaaatttgtagcaagcagtgacaac |
329 |
Q |
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| T |
14251171 |
aatagacattcaaccactagttttagctgcaattgcatacgagaaatctacggccaacgagtccgtgcagctagagaaatttgtagaaagcagggacaac |
14251270 |
T |
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| Q |
330 |
actcttgttagagatggtgtcatatctct |
358 |
Q |
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| T |
14251271 |
actcttgttagagatggtgtcatatctct |
14251299 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 210 - 277
Target Start/End: Complemental strand, 4987656 - 4987589
Alignment:
| Q |
210 |
gattttatgggcgaagctgaaatagacattcaaccactagttttagctgcaattgcatacgagaaatc |
277 |
Q |
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| T |
4987656 |
gattttatgggagaggctgaaatagacattcaaccattagtatcagcagcaaaagcatatgagaaatc |
4987589 |
T |
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