View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12894_high_6 (Length: 342)
Name: NF12894_high_6
Description: NF12894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12894_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 24 - 341
Target Start/End: Complemental strand, 785382 - 785065
Alignment:
| Q |
24 |
cattatttgcattcccttcccctttgtgttgctttttacttatttaattagtgctataacttagttgattttgccaacacatactatctggaaccttcta |
123 |
Q |
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| T |
785382 |
cattatttgcattcccttcccctttgtgttgctttttacttatttaattagtgctataacttagttgattttgccaacacatactatctggaaccttcta |
785283 |
T |
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| Q |
124 |
attttccaatacaaaaagaatgaaaaagccacggttcctttgaatttgaatgacaataacaaatcattaggagatcactgattcctttataattagtatg |
223 |
Q |
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| T |
785282 |
attttccaatacaaaaagaatgaaaaagccacggttcctttgaatttgaatgacaataacaaatcattaggagatcactgattcctttataattagtatg |
785183 |
T |
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| Q |
224 |
cataaagatgcaatataaagttgtggttgacattggctaggaacaaggatcatgtaattaatttattcattagtgcaccaaatgatcaatatgttgctta |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
785182 |
cataaagatgcaatataaagttgtggttgacattggctaggaacaaggatcatgtaattaatttattcattagtgcaccaaatgatcaaaatgttggtta |
785083 |
T |
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| Q |
324 |
ttattttattggacatgc |
341 |
Q |
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| T |
785082 |
ttattttatgggaaatgc |
785065 |
T |
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